New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1279401 =	40 (0.920)	4 (0.100)	4/272	5.8	9.6%	intergenic (+53/‑463)	narK/narG	nitrate/nitrite transporter/nitrate reductase 1, alpha subunit
	?	NC_000913	1279431 =	37 (0.890)					intergenic (+83/‑433)	narK/narG	nitrate/nitrite transporter/nitrate reductase 1, alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACA  >  NC_000913/1279264‑1279541                                                                                                                                          |                                                                                                                                              cGGCGCAATGGAGGTATTTTTGATTTTCTATATCGCCGGCGTAGTGATGACCTGGGCGGTATATGGTCGGCATTCGAAAAAATAAACCGTTACTCGTCATACTGCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGt                                                                                                                                          <  2:667691/143‑1 (MQ=255)  ggcttgaTGAAGGTATTTTTGATTTTGTATGTCGCCTGCGAGGTGAATAGGTGGGCGGGATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTc                                                                                                                                         <  2:165547/137‑1 (MQ=255)            aGGTATTTTTGATTTTCTATCTCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTa                                                                                                                               <  1:96653/143‑1 (MQ=255)            aGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTa                                                                                                                               <  2:740057/143‑1 (MQ=255)                     tgcttttCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTcc                                                                                                                      <  2:566758/140‑1 (MQ=255)                       tttttGTCTATCGCCGGCGGAGGGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTg                                                                                                                    <  1:642336/142‑1 (MQ=255)                        ttttCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTgg                                                                                                                   >  2:662319/1‑143 (MQ=255)                         tttCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAATAATCGCCTgtg                                                                                                                  >  1:531557/1‑141 (MQ=255)                             tataTCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTATCGTCAGCTcccgcgctgc                                                                                                              >  1:416111/1‑135 (MQ=38)                                  cGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGGTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTCGTAAGCTCCTGGGAttcattca                                                                                                         >  1:705825/1‑143 (MQ=255)                                                ttACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTCCTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCCCTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCt                                                                                           <  2:393264/143‑1 (MQ=255)                                                  aCCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGACTCATTCACTTGCCGCCTTCCTG‑t                                                                                        >  2:596038/1‑143 (MQ=255)                                                       ggCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAAcc                                                                                   >  1:453136/1‑143 (MQ=255)                                                         cagtgtatcgccGGCATTCCAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATACACCCCAGTCCCTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGa                                                                                 <  1:764111/132‑1 (MQ=255)                                                          ggTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TCATCCGat                                                                                >  2:8736/1‑142 (MQ=255)                                                                  gTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAGACCGAATtataaac                                                                        >  1:217781/1‑140 (MQ=255)                                                                            tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTCACTTTAGTAAGCTCCGGGGATTCATTCACTTCCCGCCTTCCCG‑TAACCCTACTtctatacattggccaac                                                              >  1:413504/1‑132 (MQ=255)                                                                               aaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTg                                                           <  2:451971/143‑1 (MQ=255)                                                                               aaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACGTACGTTAGTAAGCTCCTGGGAGTCATCCCATTG‑GGGTACCCTGTTAAACCGAATTATATAGAGTAAAATATTTg                                                           >  1:737740/1‑143 (MQ=255)                                                                                aaaTTAACCGTTACTCGTCATACTTCGGATTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGATCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TACATCGAATTATATAGAGTAAAATACTTGa                                                          >  1:436689/1‑143 (MQ=25)                                                                                aaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGa                                                          >  2:79589/1‑143 (MQ=255)                                                                                    aaaCCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTCTAGTAGGCTCCTGGGATTCATTCACCTGCCGCGTCCCTG‑TAAACCGACTCATCTAGAGTCAAATACTGGATCAt                                                      >  1:495174/1‑143 (MQ=255)                                                                                                gTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGc                                          >  2:495647/1‑143 (MQ=255)                                                                                                gTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGc                                          >  2:748555/1‑143 (MQ=255)                                                                                                      cTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCatgatg                                    >  2:362648/1‑143 (MQ=255)                                                                                                         cGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcg                                 >  2:630006/1‑143 (MQ=255)                                                                                                           ggTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcgcg                               >  2:460670/1‑143 (MQ=255)                                                                                                                 gtcgccgtcggctgccTCCCTTCACCCCAGTCACTTACTTTAGTATGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATCGAGTAAAATACTTGATTATCCTTTGCGCGACATCATGCCgcgcaaagg                         <  1:487350/135‑6 (MQ=255)                                                                                                                 aTGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATTTGCGTCTATCCTTTGCGCGGCATGATGTCGCGCttttt                         >  2:316309/1‑143 (MQ=38)                                                                                                                  tgtgCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCtttttt                        >  2:538182/1‑143 (MQ=255)                                                                                                                   gtgCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCttttttt                       <  2:638102/143‑1 (MQ=255)                                                                                                                     ggtgcggctgcgTTCATCCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTAt                     <  1:43126/141‑1 (MQ=255)                                                                                                                     gctgcggctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTAt                     >  2:54644/1‑143 (MQ=255)                                                                                                                               cgTTCATTCACCCTAGTCACTGACTTTAGTAAGCTCCTGTGATTCATTCACTTGCCGGCTCCGGG‑GGGACAACACGATATAGGGTAAAACATTTTATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTa           <  2:352337/143‑1 (MQ=255)                                                                                                                                 ttcattcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCTTTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAGTATTTGCTTATCCTTTGCGCGCCATGATGTCGCGCTTTTTTTATGCGTCCTTTGGt         >  2:617111/1‑143 (MQ=255)                                                                                                                                 ttcattcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGt         <  2:705825/143‑1 (MQ=255)                                                                                                                                    attcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTac      <  1:364139/143‑1 (MQ=255)                                                                                                                                     ttcaCCCCGGTCACTTACTTTAGTAGGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGTTATGGTTTCCCGCTATTTTTATGCGTCATTTAGTTaca     <  1:419684/143‑1 (MQ=255)                                                                                                                                        cccccAGTCAATTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGCCGCGCTTTTTTTATGCGTCATTTAGTTacagca  >  1:132800/2‑143 (MQ=255)                                                                                                                                        aCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTacaaca  >  2:624915/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                              CGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACA  >  NC_000913/1279264‑1279541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.