| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1279401 = | 40 (0.920) | 4 (0.100) | 4/272 | 5.8 | 9.6% | intergenic (+53/‑463) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| ? | NC_000913 | 1279431 = | 37 (0.890) | intergenic (+83/‑433) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAT > NC_000913/1279297‑1279572 | cGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGGTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTCGTAAGCTCCTGGGAttcattca > 1:705825/1‑143 (MQ=255) ttACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTCCTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCCCTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCt < 2:393264/143‑1 (MQ=255) aCCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGACTCATTCACTTGCCGCCTTCCTG‑t > 2:596038/1‑143 (MQ=255) ggCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAAcc > 1:453136/1‑143 (MQ=255) cagtgtatcgccGGCATTCCAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATACACCCCAGTCCCTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGa < 1:764111/132‑1 (MQ=255) ggTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TCATCCGat > 2:8736/1‑142 (MQ=255) gTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAGACCGAATtataaac > 1:217781/1‑140 (MQ=255) tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTCACTTTAGTAAGCTCCGGGGATTCATTCACTTCCCGCCTTCCCG‑TAACCCTACTtctatacattggccaac > 1:413504/1‑132 (MQ=255) aaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTg < 2:451971/143‑1 (MQ=255) aaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACGTACGTTAGTAAGCTCCTGGGAGTCATCCCATTG‑GGGTACCCTGTTAAACCGAATTATATAGAGTAAAATATTTg > 1:737740/1‑143 (MQ=255) aaaTTAACCGTTACTCGTCATACTTCGGATTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGATCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TACATCGAATTATATAGAGTAAAATACTTGa > 1:436689/1‑143 (MQ=25) aaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGa > 2:79589/1‑143 (MQ=255) aaaCCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTCTAGTAGGCTCCTGGGATTCATTCACCTGCCGCGTCCCTG‑TAAACCGACTCATCTAGAGTCAAATACTGGATCAt > 1:495174/1‑143 (MQ=255) gTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGc > 2:495647/1‑143 (MQ=255) gTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGc > 2:748555/1‑143 (MQ=255) cTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCatgatg > 2:362648/1‑143 (MQ=255) cGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcg > 2:630006/1‑143 (MQ=255) ggTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcgcg > 2:460670/1‑143 (MQ=255) gtcgccgtcggctgccTCCCTTCACCCCAGTCACTTACTTTAGTATGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATCGAGTAAAATACTTGATTATCCTTTGCGCGACATCATGCCgcgcaaagg < 1:487350/135‑6 (MQ=255) aTGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATTTGCGTCTATCCTTTGCGCGGCATGATGTCGCGCttttt > 2:316309/1‑143 (MQ=38) tgtgCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCtttttt > 2:538182/1‑143 (MQ=255) gtgCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCttttttt < 2:638102/143‑1 (MQ=255) ggtgcggctgcgTTCATCCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTAt < 1:43126/141‑1 (MQ=255) gctgcggctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTAt > 2:54644/1‑143 (MQ=255) cgTTCATTCACCCTAGTCACTGACTTTAGTAAGCTCCTGTGATTCATTCACTTGCCGGCTCCGGG‑GGGACAACACGATATAGGGTAAAACATTTTATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTa < 2:352337/143‑1 (MQ=255) ttcattcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCTTTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAGTATTTGCTTATCCTTTGCGCGCCATGATGTCGCGCTTTTTTTATGCGTCCTTTGGt > 2:617111/1‑143 (MQ=255) ttcattcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGt < 2:705825/143‑1 (MQ=255) attcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTac < 1:364139/143‑1 (MQ=255) ttcaCCCCGGTCACTTACTTTAGTAGGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGTTATGGTTTCCCGCTATTTTTATGCGTCATTTAGTTaca < 1:419684/143‑1 (MQ=255) cccccAGTCAATTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGCCGCGCTTTTTTTATGCGTCATTTAGTTacagca > 1:132800/2‑143 (MQ=255) aCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTacaaca > 2:624915/1‑143 (MQ=255) ccAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAACTATTTGATTTGGTTTTATGCGGCACGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATAc > 2:755697/1‑143 (MQ=255) aGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTa > 1:420746/1‑143 (MQ=255) acttGAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATCAACGTTTGTAGATTATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGCCATTTAGTTACAACATACTAATGTtata < 2:173789/143‑1 (MQ=255) tttAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATACATTGTTCAGGATAATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACGAATGTTATATg > 2:174056/1‑143 (MQ=255) ttAGTAAGCTGCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATgg < 1:685342/143‑1 (MQ=255) tAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTa < 1:415034/143‑1 (MQ=255) cTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGcc < 2:91362/143‑1 (MQ=255) tGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTTATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCg > 1:616688/1‑143 (MQ=255) ggATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGa < 1:538182/143‑1 (MQ=255) gATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAt > 1:353284/1‑143 (MQ=255) gATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTCACAACATACTAATGTTATATGGTTTATTTCGCCGGAt > 1:315594/1‑143 (MQ=255) | CGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAT > NC_000913/1279297‑1279572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |