New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1954429 =	NA (NA)	4 (0.100)	4/268	5.7	NA	noncoding (1/98 nt)	RIP139 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP139 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 2549531	NA (NA)					noncoding (68/98 nt)	RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

CAGCGACGCACCGAATGGATGGTTACCGAATCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAT  >  NC_000913/1954288‑1954570                                                                                                                                              |                                                                                                                                              cagcGACGCACCGAATGGATGGTTACCGAATCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGCTTGCGCGCAAGCCGTAAAGGTGTGGTATTACTGc                                                                                                                                              >  2:289268/1‑143 (MQ=255)  agcGACGCACCGAATGGATGGTTACCGAATCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGcc                                                                                                                                             >  2:749940/1‑143 (MQ=255)     gACGCACCGAATGGATGGTTACCGAATCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAAGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGCCAGGTACTACTGCCgct                                                                                                                                          >  1:520922/1‑141 (MQ=255)     gACGCACCCAATCGATGGTCACCGAATCGCTGGCCGATCTCACAGAACGTCGTGATCCGCGTAAAACGGTGGAAGGTTCTCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGa                                                                                                                                          <  2:207222/143‑1 (MQ=255)            cGAGTGGAGGGTTACCGAACCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATgcggcg                                                                                                                                   <  2:671696/143‑1 (MQ=255)             gAATGGATGGTTACCGAATCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGGTGCGGCGt                                                                                                                                  >  1:151484/1‑143 (MQ=255)             gAATGGATGGTTACCGAATCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCACGCAAGCCGTAAAAGTCAGGTATTACTGCAAGATccggcta                                                                                                                                  >  1:298059/1‑141 (MQ=255)                   agggTTACGGAATCGCTGGCCGAGTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGc                                                                                                                            <  1:316610/141‑1 (MQ=255)                    tggTTACCGAATCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCCCGCAAGCCGTAAAGGTCTGGTATTACTCCCGAATGCGCCCTGAACAcc                                                                                                                           >  2:577952/1‑143 (MQ=255)                    gggTTGCCGACTCGCTGGCCGATTCCCCCTCCCCACGTGACCCGGGTACAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGcc                                                                                                                           <  1:600369/142‑1 (MQ=255)                           cGAATCGCTGGCCGATTTCCTCAACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGCTTGCGCGCAAGCCGTAAGCGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATcca                                                                                                                    >  1:20506/1‑142 (MQ=255)                             aaTCTCTGGCCGATTTCCTCAGCCAACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                                  <  2:699870/143‑1 (MQ=255)                               tCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                                                                <  2:356249/143‑1 (MQ=255)                                cGCTGGCCGATCTCCTCGTCCCACATGATCCGGGTAAAACGGTGGAGGGTTATCCGGCACCTAAGCGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                               <  1:179299/143‑1 (MQ=255)                                     gCCGATTTCCTCGCCCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaaa                                                                                                          <  2:491398/143‑1 (MQ=255)                                      ccGATTTCCCCGACCCACCTGGTCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAc                                                                                                         <  1:697732/143‑1 (MQ=255)                                       cGATTTCCTCGGCCCACATGATCCGGGCAAAACGGTGGAAGGTGATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAcc                                                                                                        <  2:357771/143‑1 (MQ=255)                                         aTTTCCTCCACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGTTCTGGTATTACTGCCGGATGCTGCGTGAACGCCTTATCCGGCCTACAAAACCtt                                                                                                      <  2:524763/143‑1 (MQ=255)                                         aTTGCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCGCCTAAACGCGCGGTGCTGATTGTGCGTAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCtt                                                                                                      <  1:242750/143‑1 (MQ=255)                                           ttCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGc                                                                                                    <  2:488393/143‑1 (MQ=255)                                            tCCGCGACCCACATGATCCGGGTAAAACGGTGGGAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCt                                                                                                   <  2:273699/143‑1 (MQ=255)                                              cTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGACTTATCCGGCCTACAAAAACTTGCTaa                                                                                                 >  1:254720/1‑143 (MQ=255)                                               tCGACCCACATGATCCGGGTAAAATGGTGGAAGGTTATCCGGCACCTAAACGAGCGTTGCTGATCCCCCCCCCGCCGGATAGGTCTGGTGTTACTGCCGCATACGGCGTGAACGCGTTATACGGACTACAAAACATTGGTact                                                                                                >  1:664146/1‑141 (MQ=255)                                                cGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAAtt                                                                                               <  1:749940/143‑1 (MQ=255)                                                       caTGATCAGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTAATTGAGAGCAAGCAGTAAAGGTCTGGTATTACTGACGGATGCGGCGTGAACGCCTTATCCGGCATACAAAACCTTGCTAATTCAatata                                                                                        >  2:35429/1‑143 (MQ=38)                                                             ccGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCCTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAg                                                                                  >  2:719669/1‑143 (MQ=255)                                                                 gTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGAc                                                                              >  2:716516/1‑143 (MQ=255)                                                                   tagaCGGGGTAAGGTTGTCCGGCACCTAATCGCGCTGTGCTGAGTGCGCGCAAGCCGTAAAGGTTTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTa                                                                            <  1:39028/140‑1 (MQ=25)                                                                               ggTTATCCCGCACCTAACCGCGCGGTGCTGATCGCGCGCAAGCCGCAAAGGTCTGGTATTACTGCCGTATGCGGCGTGAACGCCTTATCCGGCCTACAACACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGAt                                                                <  2:254720/143‑1 (MQ=37)                                                                                 tgagcgggCACCTGTGCGCGCGGTGCGGGTTGGTCGTGAGGCGGAAAGGGGTGGGGTTACGGCGGGGTGCGGCGTGAACGCCTTAGCCGGTCTTCGAAACCTTGCTAATTCGATATATTGCGGGGACTATGTAGGCCTGATaa                                                              <  1:141691/137‑1 (MQ=255)                                                                                  tATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAg                                                             >  1:374442/1‑143 (MQ=255)                                                                                            cTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCAt                                                   >  2:505383/1‑143 (MQ=255)                                                                                                  gcgcgGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATACGCATAGCGCATCAGGCa                                             >  2:624008/1‑143 (MQ=255)                                                                                                       gTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCCGGGACTATGTAGGCCTGCTAAGCATAGCGCATCAGGCAGCgtt                                        >  2:211746/1‑143 (MQ=255)                                                                                                            gATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCAACAGGCAGCTTTACGtt                                   >  1:253678/1‑143 (MQ=255)                                                                                                              ttGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg                                 <  2:713552/143‑1 (MQ=255)                                                                                                               tGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGCAAAGAATAGCGCATCAGGCAGCTTTACGTTTGc                                >  2:315238/1‑143 (MQ=255)                                                                                                                gcgcgcAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCa                               >  1:551176/1‑143 (MQ=255)                                                                                                                  gcgcAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGACATATCCGGCCTACAAAACCTTGCTAATTCAAGATATTGCCGGGACTATGTAGGCCTGATAAGCGTAGCGCATCCGGCAGATGTTCGTTTGCATa                             >  1:40331/1‑143 (MQ=21)                                                                                                                            tAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGGAGCATTCCGTGTGCATAACCTTAgcgc                   >  1:727705/1‑143 (MQ=21)                                                                                                                                 gTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCCCAGCGCCCggc              >  1:508677/1‑141 (MQ=255)                                                                                                                                  tCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTACAGGGCCTATGTAGGCCTGATAAGCATAGCGCCTCAGGCAGCTTTACGTTTGCATAACCTCAGCGCACGatt             >  1:193171/1‑143 (MQ=21)                                                                                                                                    tGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGGTTcc           >  2:4453/1‑143 (MQ=255)                                                                                                                                     ggTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCg          <  1:44038/143‑1 (MQ=255)                                                                                                                                            cTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCggaaacgggcgctg   <  2:520922/143‑14 (MQ=255)                                                                                                                                             ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCCTTACGTTTGCATAACCGCAGCGCCCGTTTCCGGGCGCTAt  >  2:666675/2‑143 (MQ=25)                                                                                                                                              |                                                                                                                                              CAGCGACGCACCGAATGGATGGTTACCGAATCGCTGGCCGATTTCCTCGACCCACATGATCCGGGTAAAACGGTGGAAGGTTATCCGGCACCTAAACGCGCGGTGCTGATTGCGCGCAAGCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAT  >  NC_000913/1954288‑1954570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.