New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1954429 =	NA (NA)	4 (0.100)	4/268	5.7	NA	noncoding (1/98 nt)	RIP139 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP139 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 2549531	NA (NA)					noncoding (68/98 nt)	RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

TTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCA  >  NC_000913/2549390‑2549666                                                                                                                                              |                                                                                                                                        ttAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGAGTTCGTAgg                                                                                                                                        >  1:439701/1‑143 (MQ=255)  tAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGAATTCGTAgga                                                                                                                                       >  2:311576/1‑142 (MQ=255)   aaaGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGcc                                                                                                                                      <  2:743552/143‑1 (MQ=255)      gCAGAATTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCCGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGa                                                                                                                                   <  2:256355/143‑1 (MQ=255)          aaGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACACTATATTGAATTAGCACGATTTCGTCTGCCGGATAAg                                                                                                                               >  2:703539/1‑143 (MQ=255)                taaAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGGTc                                                                                                                         >  2:45071/1‑143 (MQ=255)                            tcagtAATGTTACTGGCTAGTATGGAAGGACTGACAAACGCAAAACTTCCTGACGCGCTACGCTTATCAGTCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                                                                             <  1:221289/143‑1 (MQ=18)                                  aTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCgtgt                                                                                                       >  2:432459/1‑143 (MQ=255)                                      tACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCCTCCGGCGTGGACag                                                                                                   >  1:723095/1‑142 (MQ=255)                                        ctggctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAAcg                                                                                                 <  2:439701/143‑1 (MQ=255)                                                 ttgatactgctgcCAAACGCAAAACTGCCTTATGCGTTACGCTTTTCAGGCCTACATGGAGCCCACAATATATTGAATTAGCACGACTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTgg                                                                                        <  2:36218/136‑1 (MQ=18)                                                    agagTGTTGACAAACGAAAAACTGCCTTGTGCGCTACGGTTATGAGGCATACGTGGAGCCCACAATATACTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTca                                                                                     <  2:232198/143‑1 (MQ=21)                                                           tGACAAACCCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTAGAGCCCACACTATATTGAATTAGCACGATTTCGTAGGCCGGATACGGCGTTCACGCCGCATCCGGAGCGTACAACGCGCCTTTGCTcaacacacg                                                                              >  1:342023/1‑139 (MQ=18)                                                             aCAAACTCATAACTTCCTTCTGCTCTACGTTTTTCAGCTTTATGTGGAGCCCACAATATATTGAATTAGCGCGATTCCGTAGGCCGGAGAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGa                                                                            <  2:230584/143‑1 (MQ=21)                                                             aCAAACGCAAAACTGCCTGATGCGCTACGTTTATCAGGCCTACGTAGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGTGGGATAAGGCGTTCACGCCGCGTGCGGCGTGTTCCACGCTCACTTTTTCAACAATCTGa                                                                            <  2:760522/143‑1 (MQ=18)                                                              cgaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGGCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAg                                                                           <  1:305385/141‑1 (MQ=255)                                                               aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAgg                                                                          >  1:289752/1‑143 (MQ=255)                                                               aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAgg                                                                          >  2:275565/1‑143 (MQ=255)                                                               aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAG‑CCACAATATATTGAATTAGCACGATTTCGTAGGCCGCATAAGGCGTTCACGCCCCCTCCGGCGTGTACAACGCGCACCAGGTCAATCATCTgctgc                                                                         >  2:289272/1‑139 (MQ=18)                                                               aaaCGCAAAACTGCCTGATGCGCTACGCTTAGCAGACCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACCATCTGAgg                                                                          >  1:419390/1‑143 (MQ=255)                                                                 aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGcc                                                                        >  2:454774/1‑143 (MQ=255)                                                                  cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCca                                                                       >  2:218031/1‑143 (MQ=255)                                                                    caaaattttcTGATTCGCTACTCTTATCATTCTTACGTGGAGCCCACAAAATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCccgt                                                                     <  2:177716/134‑1 (MQ=21)                                                                             cTGATGCGCTACGCTTATCAGGCCTACATGAAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCTGTACAACGCGCACCTGGTCAACAATCTGAGGCAAGTCAGTAATGt                                                            >  1:92767/1‑143 (MQ=21)                                                                              tGATCCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGACTTCGTAGGCCGGATAAGGCGTTCACACCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAAACTGAGGCCAGTCAGTAATgat                                                           >  1:309241/1‑141 (MQ=255)                                                                                    gcTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACTCCCACCCGCCCAACAATCTGAGGCCAGTCAGAAACGCTAcaccc                                                     >  1:302019/1‑139 (MQ=21)                                                                                       aCGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTgg                                                  <  2:742807/143‑1 (MQ=255)                                                                                        cGCTTATCAGGCCGACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGc                                                 <  2:610397/143‑1 (MQ=255)                                                                                           ttATCAGGCCTACGTGGAGCCCACAAGATATTGAATTAGCACGATTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGCCCACCATCTGCGGCCAGTCAGTCATGTTACTCCCTCGccct                                              >  1:726842/1‑141 (MQ=25)                                                                                                aGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGGCAGTAATGTTACTGCCTGGCCTTTAATc                                         >  2:323454/1‑143 (MQ=255)                                                                                                 ggtttACGTTGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa                                        <  2:119775/139‑1 (MQ=255)                                                                                                 ggCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAGTTTCCGGCCCGACAGTAATGTTACGGCCTGGCCTTTAATcg                                        >  1:406626/1‑142 (MQ=25)                                                                                                 ggCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGACGAATCGGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa                                        >  2:284743/1‑143 (MQ=255)                                                                                                   ccTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAAt                                      <  2:708449/143‑1 (MQ=255)                                                                                                   ccTACGAGGAGCCCACATTATGTTCAATTAGCACGATTGCGTAGGCCGGATAAGGCGTTCACGCTGGATCAGACTTTTACGACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAAt                                      <  1:664067/143‑1 (MQ=37)                                                                                                       cGTGGAGCCCACAATATATTGAATTAGGACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGGATCCGGCGTGTACAACGCGCACTTGGTCAACAATCCGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAAt                                  <  2:383919/143‑1 (MQ=255)                                                                                                       cGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACACCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTCATCAATGact                                  >  2:288857/1‑141 (MQ=255)                                                                                                            aGCCAACAATTGACTGAGTTAGCAGTATTGCGTAGGCCGGATAAGGCGTTCATGTCGCAGCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaa                             <  1:609878/143‑1 (MQ=37)                                                                                                             gCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaaa                            <  1:64933/143‑1 (MQ=255)                                                                                                                      gtcttGAATTCGCCCGCTGTCGTATGCCGGATAAGGCGTTCGTGCCGCATCCGGCGTGTGCATCGCGCACTTGGTCAACAATCTGACGCCAGTCAGTAATGTTACTTCCTGGCCTTTAATCAATGAATCAGAATTGCTTACAg                   <  1:194912/140‑1 (MQ=255)                                                                                                                       tatTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc                  <  1:390590/143‑1 (MQ=255)                                                                                                                       tatTGAATTAGCACCATTGCGTAGGCCGGATAATGGGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc                  <  1:427568/143‑1 (MQ=255)                                                                                                                         ttGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgcgc                <  1:597118/143‑1 (MQ=255)                                                                                                                         ttGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgcgc                >  2:410950/1‑143 (MQ=255)                                                                                                                               gaGCACGAGTTCGTAGGCGGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCaa          <  1:644781/142‑1 (MQ=255)                                                                                                                                  cACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTAATGGCTGGCCTTTAATCAATGAACCAGAAACGCTTACAGCGCCATCAACtt       >  1:6849/1‑143 (MQ=255)                                                                                                                                   aCGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCACTGAATCAGAAACGCTTCCAGCGCCATCAACTTg      >  2:620715/1‑143 (MQ=255)                                                                                                                                     gATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGGCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTc    <  2:693079/143‑1 (MQ=255)                                                                                                                                       tttCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCACACTTGGTCAACAATCTGAGGCCCGCAAGTAATGTTACTGCCTGGCCTTTGATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCa  >  2:317817/1‑143 (MQ=38)                                                                                                                                              |                                                                                                                                        TTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCA  >  NC_000913/2549390‑2549666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.