New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3148954	43 (0.990)	6 (0.150)	5/266	5.2	12.6%	intergenic (+19/+21)	gpr/yqhA	L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein
	?	NC_000913	= 3148959	43 (1.050)					intergenic (+24/+16)	gpr/yqhA	L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATCCATAA  >  NC_000913/3148815‑3149096                                                                                                                                            |                                                                                                                                               aCTAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAACCGGGGGCAGGCGCCCACCGATAAATGACCTGATAATAACGGGCGCGCGa                                                                                                                                             >  1:143941/1‑143 (MQ=255)  gtAGTGGAGGGCGTGCAGGCGGTGAAGAATCTGACATTTAGCACCATGGAGCTGGCGCAGATTGATCAGCACATCCCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGaa                                                                                                                                            <  1:499410/142‑1 (MQ=255)   tAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGATGAAACTGTGGCAGGCGTCTTCCGATAAACGACCTGTCAATAACCGGCGCGCGAAc                                                                                                                                           >  1:569933/1‑143 (MQ=255)          gaACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGgcgcggttcgcgcgccc                                                                                                                                    <  2:530010/143‑13 (MQ=255)          gaACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGgcgcggttcgcgcgccc                                                                                                                                    <  2:106457/143‑13 (MQ=255)          gaACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAAATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGACCCGAGccc                                                                                                                                    >  1:38800/1‑143 (MQ=255)              gTGCAGGCGCTGAATAAGCGGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGACAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAat                                                                                                                                <  1:194635/143‑1 (MQ=255)               tGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATCGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAatc                                                                                                                               <  2:630524/143‑1 (MQ=255)                           ataatCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGAtt                                                                                                                   <  2:698911/143‑1 (MQ=255)                               tCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCGGAGCAGAGATTATGa                                                                                                               >  1:211735/1‑143 (MQ=255)                                 tGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATACATGAGCTGTCAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACg                                                                                                             >  2:172238/1‑143 (MQ=255)                                         cggagcAACGAGCTGGCGCAGATTGATCAGCGTAGCTGCGATGGCGAGCTGAATCTGTGTGAGGCGTCTTCCGATGAATGACGGGTTAATAACGGGCGCGTGAACCGAGCCCGAATCAGATCAGTGATTATGACGagtcagtc                                                                                                     <  1:75855/138‑1 (MQ=255)                                           cACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCgg                                                                                                   >  2:327717/1‑143 (MQ=255)                                                   aGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGCGCTGAATCTGTGGCACGCGCCTTCCGAGAAGTGACCCGTTAATAACGGGCGCGCGCACCGCGCCCGAATCAGATCAGTCACTATCGCGAGCCAGTCGGTCAAGaca                                                                                           >  1:282148/1‑141 (MQ=255)                                                      tGGCGCCGATTTATGAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGcc                                                                                        <  1:69/143‑1 (MQ=255)                                                        gcgcAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCa                                                                                      >  2:95546/1‑143 (MQ=255)                                                                 gATCAGCATATCGCCGATGGCGGGCGGAATCTGTGGCAGGCGTCTGCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATg                                                                             <  1:139849/143‑1 (MQ=255)                                                                   tCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGCCACGCTAGCCCATCACAAATGCa                                                                           >  1:735087/1‑143 (MQ=255)                                                                   tCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGACAGGCGGCCAAGCTAGCCCATCACCAATGCa                                                                           >  1:331403/1‑143 (MQ=255)                                                                    cAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGACCAGTGATTATGACGAGACAGTCGGTCAAGATAGCCCACCACaaaatcag                                                                          >  1:291369/1‑138 (MQ=255)                                                                       cATATCGCCGATGGCAAGCAAAATCTGGTGGTGGCGTCTTCCGATAAATGACCTGGTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGaaa                                                                       <  2:281248/143‑1 (MQ=255)                                                                          atCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGATAATCACGGGCGCGCGAACCGCGCCCGAATCAGACCAGTGATTATGACGAGTCAGTCGGTCAAGATACCCCCTCCCAAATGCAGAAAGca                                                                    >  2:182051/1‑143 (MQ=255)                                                                            cGCCGAGGGCGAGCTGAATCTGTGGCAGGCGTGTTCCGATAAATGACCTGTTAAGAACGGGCGCGCGAACCGCGCCCGAATCAGGTCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGcaca                                                                  <  1:377040/143‑1 (MQ=255)                                                                                 aTGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGt                                                             <  2:532388/143‑1 (MQ=255)                                                                                   ggcgagtgtaaTCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGTACCGCGCCCGAATCAGATCAGTGAGTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCa                                                           <  1:90129/134‑1 (MQ=255)                                                                                   ggCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCa                                                           <  1:199666/143‑1 (MQ=255)                                                                                     cGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGa                                                         <  2:344116/143‑1 (MQ=255)                                                                                        gCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATCACGGGCGCGCGAACCGCGCCCGAATCAGAGCAGTGATCATGACGCGACAGTCGGTCAAACGAGCCCAGCACAAACGCCGCAAGCACAAAccgaccacgg                                                      >  1:474526/1‑134 (MQ=255)                                                                                          tGAATCTGTGGCAGGCGTCTTCCGAAAAATGACCTGTTAATAACGGGCGCACGAACGGCGCCCGAATCAGAACAGTAAAAATGAAAAGTAAGACGGACAAGAAAGCCAAACAAAACTGAAGAAAACACaaaagaaaaaaggaa                                                    >  1:8585/1‑131 (MQ=255)                                                                                               cTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACCACAGATGGATAAGGa                                               >  1:85399/1‑143 (MQ=255)                                                                                                 gtgGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACg                                             >  2:418076/1‑143 (MQ=255)                                                                                                    gCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTAc                                          <  1:509337/143‑1 (MQ=255)                                                                                                     gcggcgggggcaggtAAAGGACCTGTTAATGACGGGCGGGCGAACCGCGCCCGGAGCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGGCCATCACAAATGCAGAAAGCATAAACGTCAGATGGAGAATGACGTAcc                                         <  1:725619/129‑1 (MQ=255)                                                                                                      gggCGTCTCGCGATAAATGACCTGTGAATGACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGGCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACca                                        <  1:16461/142‑1 (MQ=255)                                                                                                        gCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACcaca                                      >  2:739408/1‑143 (MQ=255)                                                                                                             ttCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGACTCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCACACAGCACAAACGTCAGATGGATAATGACGTACCACACCAGt                                 >  1:395774/1‑143 (MQ=255)                                                                                                              tctgatagatcgccTGTTAATTACGGGCGCGCGAACGGCTTCCGAATCAGATCAGTGATTATTACGAGCTCCTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGtt                                <  1:369134/131‑1 (MQ=255)                                                                                                                 gATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGCATCAGATCAGTGATTATGACGAGCCATTTGGTCAAGATAGCCCATCACAAATGCAGACAGCACAAACGTCAGATGGATAATGACGTACCACATCCGTTTGt                             >  2:285201/1‑143 (MQ=255)                                                                                                                 gATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGt                             >  2:363557/1‑143 (MQ=255)                                                                                                                      aTGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGGTATcg                        >  1:26947/1‑142 (MQ=255)                                                                                                                         aCCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCggg                     >  1:52350/1‑143 (MQ=255)                                                                                                                          ccTGTTAATAAGGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGa                    <  1:630648/143‑1 (MQ=255)                                                                                                                             gTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGAcct                 >  2:124609/1‑141 (MQ=255)                                                                                                                                        gcgcgcGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACCTTTTTCGCATcc      >  2:695790/1‑143 (MQ=255)                                                                                                                                            gcgAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCCCAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATcactaa  >  1:354390/1‑138 (MQ=255)                                                                                                                                            |                                                                                                                                               ACTAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATCCATAA  >  NC_000913/3148815‑3149096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.