New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3148954	43 (0.990)	6 (0.150)	5/266	5.2	12.6%	intergenic (+19/+21)	gpr/yqhA	L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein
	?	NC_000913	= 3148959	43 (1.050)					intergenic (+24/+16)	gpr/yqhA	L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATCCATAAAGA  >  NC_000913/3148817‑3149099                                                                                                                                               |                                                                                                                                             tAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGATGAAACTGTGGCAGGCGTCTTCCGATAAACGACCTGTCAATAACCGGCGCGCGAAc                                                                                                                                              >  1:569933/1‑143 (MQ=255)        gaACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAAATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGACCCGAGccc                                                                                                                                       >  1:38800/1‑143 (MQ=255)            gTGCAGGCGCTGAATAAGCGGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGACAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAat                                                                                                                                   <  1:194635/143‑1 (MQ=255)             tGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATCGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAatc                                                                                                                                  <  2:630524/143‑1 (MQ=255)                         ataatCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGAtt                                                                                                                      <  2:698911/143‑1 (MQ=255)                             tCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCGGAGCAGAGATTATGa                                                                                                                  >  1:211735/1‑143 (MQ=255)                               tGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATACATGAGCTGTCAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACg                                                                                                                >  2:172238/1‑143 (MQ=255)                                       cggagcAACGAGCTGGCGCAGATTGATCAGCGTAGCTGCGATGGCGAGCTGAATCTGTGTGAGGCGTCTTCCGATGAATGACGGGTTAATAACGGGCGCGTGAACCGAGCCCGAATCAGATCAGTGATTATGACGagtcagtc                                                                                                        <  1:75855/138‑1 (MQ=255)                                         cACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCgg                                                                                                      >  2:327717/1‑143 (MQ=255)                                                 aGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGCGCTGAATCTGTGGCACGCGCCTTCCGAGAAGTGACCCGTTAATAACGGGCGCGCGCACCGCGCCCGAATCAGATCAGTCACTATCGCGAGCCAGTCGGTCAAGaca                                                                                              >  1:282148/1‑141 (MQ=255)                                                    tGGCGCCGATTTATGAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGcc                                                                                           <  1:69/143‑1 (MQ=255)                                                      gcgcAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCa                                                                                         >  2:95546/1‑143 (MQ=255)                                                               gATCAGCATATCGCCGATGGCGGGCGGAATCTGTGGCAGGCGTCTGCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATg                                                                                <  1:139849/143‑1 (MQ=255)                                                                 tCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGCCACGCTAGCCCATCACAAATGCa                                                                              >  1:735087/1‑143 (MQ=255)                                                                 tCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGACAGGCGGCCAAGCTAGCCCATCACCAATGCa                                                                              >  1:331403/1‑143 (MQ=255)                                                                  cAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGACCAGTGATTATGACGAGACAGTCGGTCAAGATAGCCCACCACaaaatcag                                                                             >  1:291369/1‑138 (MQ=255)                                                                     cATATCGCCGATGGCAAGCAAAATCTGGTGGTGGCGTCTTCCGATAAATGACCTGGTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGaaa                                                                          <  2:281248/143‑1 (MQ=255)                                                                        atCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGATAATCACGGGCGCGCGAACCGCGCCCGAATCAGACCAGTGATTATGACGAGTCAGTCGGTCAAGATACCCCCTCCCAAATGCAGAAAGca                                                                       >  2:182051/1‑143 (MQ=255)                                                                          cGCCGAGGGCGAGCTGAATCTGTGGCAGGCGTGTTCCGATAAATGACCTGTTAAGAACGGGCGCGCGAACCGCGCCCGAATCAGGTCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGcaca                                                                     <  1:377040/143‑1 (MQ=255)                                                                               aTGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGt                                                                <  2:532388/143‑1 (MQ=255)                                                                                 ggcgagtgtaaTCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGTACCGCGCCCGAATCAGATCAGTGAGTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCa                                                              <  1:90129/134‑1 (MQ=255)                                                                                 ggCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCa                                                              <  1:199666/143‑1 (MQ=255)                                                                                   cGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGa                                                            <  2:344116/143‑1 (MQ=255)                                                                                      gCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATCACGGGCGCGCGAACCGCGCCCGAATCAGAGCAGTGATCATGACGCGACAGTCGGTCAAACGAGCCCAGCACAAACGCCGCAAGCACAAAccgaccacgg                                                         >  1:474526/1‑134 (MQ=255)                                                                                        tGAATCTGTGGCAGGCGTCTTCCGAAAAATGACCTGTTAATAACGGGCGCACGAACGGCGCCCGAATCAGAACAGTAAAAATGAAAAGTAAGACGGACAAGAAAGCCAAACAAAACTGAAGAAAACACaaaagaaaaaaggaa                                                       >  1:8585/1‑131 (MQ=255)                                                                                             cTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACCACAGATGGATAAGGa                                                  >  1:85399/1‑143 (MQ=255)                                                                                               gtgGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACg                                                >  2:418076/1‑143 (MQ=255)                                                                                                  gCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTAc                                             <  1:509337/143‑1 (MQ=255)                                                                                                   gcggcgggggcaggtAAAGGACCTGTTAATGACGGGCGGGCGAACCGCGCCCGGAGCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGGCCATCACAAATGCAGAAAGCATAAACGTCAGATGGAGAATGACGTAcc                                            <  1:725619/129‑1 (MQ=255)                                                                                                    gggCGTCTCGCGATAAATGACCTGTGAATGACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGGCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACca                                           <  1:16461/142‑1 (MQ=255)                                                                                                      gCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACcaca                                         >  2:739408/1‑143 (MQ=255)                                                                                                           ttCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGACTCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCACACAGCACAAACGTCAGATGGATAATGACGTACCACACCAGt                                    >  1:395774/1‑143 (MQ=255)                                                                                                            tctgatagatcgccTGTTAATTACGGGCGCGCGAACGGCTTCCGAATCAGATCAGTGATTATTACGAGCTCCTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGtt                                   <  1:369134/131‑1 (MQ=255)                                                                                                               gATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGCATCAGATCAGTGATTATGACGAGCCATTTGGTCAAGATAGCCCATCACAAATGCAGACAGCACAAACGTCAGATGGATAATGACGTACCACATCCGTTTGt                                >  2:285201/1‑143 (MQ=255)                                                                                                               gATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGt                                >  2:363557/1‑143 (MQ=255)                                                                                                                    aTGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGGTATcg                           >  1:26947/1‑142 (MQ=255)                                                                                                                       aCCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCggg                        >  1:52350/1‑143 (MQ=255)                                                                                                                        ccTGTTAATAAGGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGa                       <  1:630648/143‑1 (MQ=255)                                                                                                                           gTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGAcct                    >  2:124609/1‑141 (MQ=255)                                                                                                                                      gcgcgcGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACCTTTTTCGCATcc         >  2:695790/1‑143 (MQ=255)                                                                                                                                          gcgAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCCCAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATcactaa     >  1:354390/1‑138 (MQ=255)                                                                                                                                            gAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCGTCCATCAAg   >  1:175318/1‑143 (MQ=255)                                                                                                                                            gAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATCCATAAAg   <  2:556838/143‑1 (MQ=255)                                                                                                                                            gAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATCCATAAAg   <  1:172238/143‑1 (MQ=255)                                                                                                                                             aaCCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATACGGGACATATTTCGCATACATAAAGa  >  2:82816/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                             TAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATCCATAAAGA  >  NC_000913/3148817‑3149099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.