New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3852833 = | 59 (1.030) | 4 (0.080) | 4/258 | 8.0 | 7.2% | intergenic (‑50/+56) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
? | NC_000913 | 3852866 = | 49 (0.920) | intergenic (‑83/+23) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
ACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGA > NC_000913/3852692‑3852971 | acaATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCGTACACGaaa > 1:664426/1‑143 (MQ=255) acaATCTGAATGCCCTGCTGGTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGaaa < 2:373501/143‑1 (MQ=255) cccTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCGTAACCGAAAACCCCCGCCCgg > 1:897535/1‑143 (MQ=255) ccTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGCCTTTCCGGGCGGCGCTTAAACGAAAAAACCCGGCCGGt > 1:532685/1‑143 (MQ=255) ttCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGcc < 2:448663/143‑1 (MQ=255) tCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGACGATGTTGTGCCCGAACTTGCCATGCTCCCGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAGACGAACGACCCCGCCCGGTGCGCGCcg > 1:15492/1‑143 (MQ=255) cAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCcggc > 2:366705/1‑143 (MQ=255) aGGAAATGAACGATAAATCCTGCGCCGGTAAAGCGCTTACGCGTCGAGGTTGTGCCCGAACTCGCCATGCTCCAGTCCTTTTCTTCTAGGCCGACCTTCCGCGGGGTGCTTAAACGAACACCCCCGCCCggctcccggcggcc > 1:688935/1‑131 (MQ=255) ggAAATGAACGATAAAGTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACGTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCcggcgg < 1:577842/143‑1 (MQ=255) gcaaTGAACGATCCATCCTGCGGCGGTGAGGCGGTTGCGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGTGCCGACTTTCCGGGAGGAAAAAAAAAAAAAAACCCCGCCCGGTTTGCGCCGGCggg < 1:97292/141‑1 (MQ=255) aaaTGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGGGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCgggg < 1:129777/143‑1 (MQ=255) gaccGATAACTTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCCGTGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGtttt < 1:1004272/140‑1 (MQ=255) gAACGGTGAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGACCTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGtttt < 1:911837/143‑1 (MQ=255) gATAAACTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGaa < 2:89473/143‑1 (MQ=255) aTAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCAGGCGGGGATCTGGAAt > 1:241350/1‑143 (MQ=255) aaaTTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCATTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGTCCGGGGGGTTTTGGAATCg > 2:474158/1‑143 (MQ=255) aaTGCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAGCTTGTCATGCTCCAGTACTCTGCTTCGGGGGGGGTTTGTGTGCAAACACTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCgt < 1:450785/143‑1 (MQ=255) aaTCCTGCGCCGGTAAAGCGCTTGCGCGTCGATGTTGTGCCCGCACTTGCCATGCTCCAGTCCTTTTCTTCTGGGTCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCgt < 1:507151/143‑1 (MQ=255) ttCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCCGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACcccgcc > 2:473362/1‑111 (MQ=255) ttCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACcccgcc < 1:473362/111‑1 (MQ=255) ttCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCgtgt > 2:882856/1‑143 (MQ=255) gcCGGTAAAGCGCTTACGCGTCGAAGTTGTGCCCGCACTTGCCATGCTCCAGTCCTTTTCTTCTGCGCCGACCTTCCCGGAGGCGCCTCACCGCAAAACCCCGCCCCGCTTGCGCCGCCGGGCCTTTGGacgcgcgtcccgtc > 1:251841/1‑130 (MQ=255) ccGGTAGAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAACCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTc < 1:425764/143‑1 (MQ=255) ccGGTAAAGCGCTTAGGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTc < 1:842549/143‑1 (MQ=255) ggTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCa < 1:699184/143‑1 (MQ=255) aaaGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGCGGTGCTGAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGGTTTGGAATCGTGTGTTGTTCCAGTc > 2:740200/1‑143 (MQ=255) cTTGCGCGTGGATGTTGTGCCCGAACTTGCCGTGCTCCAGTCCTTTTCTTATGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACg < 1:606911/143‑1 (MQ=255) cTTGCGCGTCGACGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACg < 1:32932/143‑1 (MQ=255) tCGTTGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGCGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTg < 1:353522/143‑1 (MQ=255) tgttgtGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCcga < 1:781775/143‑1 (MQ=255) ccGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGaccacc > 2:355446/1‑143 (MQ=255) ccGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGaccacc > 2:875021/1‑143 (MQ=255) gCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTCAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTGGTTCCAGTCCCTACGGCGCATTGCCGACGACcaccagcaccgg > 1:268293/1‑140 (MQ=255) cttcAGTTCTTTTCTTCTGGGCCGACTGTCCGGGAGGGGCTTAAACGAAAAACCCCGCCCTGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCATTCCCTACGGCGCATTGCCGACGACCACCACCACACGCacgac < 1:827289/140‑1 (MQ=255) tCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAACACCCCTCCCGGTTTGCGCCGGCGGGGTTTTGGCATCGTGTGTTGTTCCCGTCCCTACGGCGCATTGCCGACGCCCACCAGCacaccgccacag > 1:173573/1‑135 (MQ=255) cggcctgtgctctggggCCGGCTTTCCGGGGGGTGCTTAAACGAAACACCCCGCCCGGTTCGCGCCGGCGGGGTTTTGGACTCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCCCACGCACGACGAcc < 1:608255/129‑1 (MQ=255) aGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGCCGccc > 1:922938/1‑143 (MQ=255) ttttCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGCTGTCCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgc > 2:739830/1‑143 (MQ=255) tcttctGGGCCGACTTTCCGTGAGGTGTTTAAACGAACATCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGTCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgcggc < 1:746707/143‑1 (MQ=255) tcttctGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgcggc < 2:572562/143‑1 (MQ=255) ccttcttGGCCCACTTTCCTGCAGGGTCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgcggc < 1:89814/142‑1 (MQ=255) ttctGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGCGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCCTTGCCGACGACCACCACCCCACGCACGACGACCACTGcagcgg > 1:44553/1‑143 (MQ=255) gtgcgCCGACGTTCCGGGAGGTGCGTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGAt < 2:28802/139‑1 (MQ=255) ccGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCCCGTGGCCCACCCCGACGGATGgcgc > 1:396404/1‑143 (MQ=255) aCTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGt > 2:292431/1‑143 (MQ=255) tttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTg > 2:550303/1‑143 (MQ=255) tttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGGGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCGCGACGACCACTGcggcgggcgcggcagatg > 1:439267/1‑131 (MQ=255) tttCCGGGAGGTGCTCAAACGACACACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTg < 2:671392/143‑1 (MQ=255) ttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTgg < 2:241350/143‑1 (MQ=255) ttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTgg > 2:795006/1‑143 (MQ=255) ccGGGAGGTGCTTAAACGAGAACCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGGCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGgta < 1:895976/143‑1 (MQ=255) ggAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGGTTTGGAATCGTGTGCTGTTCCAGTCCCTGCGGCGCATTGCCGCCGACCACCACCACGCGCACGACGACCACTACGGCGGATGGCGCAgaggggggga > 1:235067/1‑134 (MQ=255) aGGTGCTTAGACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTagtagt < 1:590768/143‑1 (MQ=255) tGCTTAAACGAAAATCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGtttt < 2:90827/143‑1 (MQ=255) tGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGtttt < 2:912772/143‑1 (MQ=255) gCTTGAACGACAAGCCCCGCCCGGGTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTCCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGAAGCTGGTATTAGTTTTg < 1:366705/143‑1 (MQ=255) cgtAAACGATACAGCACGCCCGGTTCGCGCCGGCGGGTTATTGCAATACCTTGTTCGTCCAGTCCCTACTTGTCATTGCCGACGACCACCACCACCCGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGc < 2:426340/141‑1 (MQ=255) ttAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCg > 2:620293/1‑143 (MQ=255) aCGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCCTTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCCGTTGgcagcgaagaggcgggca > 1:477032/1‑129 (MQ=255) | ACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGA > NC_000913/3852692‑3852971 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |