New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3852833 =	59 (1.030)	4 (0.080)	4/258	8.0	7.2%	intergenic (‑50/+56)	ilvB/ivbL	acetolactate synthase 2 large subunit/ilvB operon leader peptide
	?	NC_000913	3852866 =	49 (0.920)					intergenic (‑83/+23)	ilvB/ivbL	acetolactate synthase 2 large subunit/ilvB operon leader peptide
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGAAGTAGTCATTGGGGACCTTGTTGGTTTT  >  NC_000913/3852727‑3853006                                                                                                                                            |                                                                                                                                             gATAAACTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGaa                                                                                                                                           <  2:89473/143‑1 (MQ=255)  aTAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCAGGCGGGGATCTGGAAt                                                                                                                                          >  1:241350/1‑143 (MQ=255)    aaaTTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCATTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGTCCGGGGGGTTTTGGAATCg                                                                                                                                        >  2:474158/1‑143 (MQ=255)     aaTGCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAGCTTGTCATGCTCCAGTACTCTGCTTCGGGGGGGGTTTGTGTGCAAACACTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCgt                                                                                                                                       <  1:450785/143‑1 (MQ=255)     aaTCCTGCGCCGGTAAAGCGCTTGCGCGTCGATGTTGTGCCCGCACTTGCCATGCTCCAGTCCTTTTCTTCTGGGTCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCgt                                                                                                                                       <  1:507151/143‑1 (MQ=255)       ttCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCgtgt                                                                                                                                     >  2:882856/1‑143 (MQ=255)             gcCGGTAAAGCGCTTACGCGTCGAAGTTGTGCCCGCACTTGCCATGCTCCAGTCCTTTTCTTCTGCGCCGACCTTCCCGGAGGCGCCTCACCGCAAAACCCCGCCCCGCTTGCGCCGCCGGGCCTTTGGacgcgcgtcccgtc                                                                                                                               >  1:251841/1‑130 (MQ=255)              ccGGTAGAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAACCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTc                                                                                                                              <  1:425764/143‑1 (MQ=255)              ccGGTAAAGCGCTTAGGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTc                                                                                                                              <  1:842549/143‑1 (MQ=255)                ggTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCa                                                                                                                            <  1:699184/143‑1 (MQ=255)                   aaaGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGCGGTGCTGAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGGTTTGGAATCGTGTGTTGTTCCAGTc                                                                                                                         >  2:740200/1‑143 (MQ=255)                         cTTGCGCGTGGATGTTGTGCCCGAACTTGCCGTGCTCCAGTCCTTTTCTTATGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACg                                                                                                                   <  1:606911/143‑1 (MQ=255)                         cTTGCGCGTCGACGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACg                                                                                                                   <  1:32932/143‑1 (MQ=255)                                 tCGTTGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGCGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTg                                                                                                           <  1:353522/143‑1 (MQ=255)                                     tgttgtGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCcga                                                                                                       <  1:781775/143‑1 (MQ=255)                                             ccGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGaccacc                                                                                               >  2:355446/1‑143 (MQ=255)                                             ccGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGaccacc                                                                                               >  2:875021/1‑143 (MQ=255)                                                     gCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTCAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTGGTTCCAGTCCCTACGGCGCATTGCCGACGACcaccagcaccgg                                                                                       >  1:268293/1‑140 (MQ=255)                                                           cttcAGTTCTTTTCTTCTGGGCCGACTGTCCGGGAGGGGCTTAAACGAAAAACCCCGCCCTGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCATTCCCTACGGCGCATTGCCGACGACCACCACCACACGCacgac                                                                                 <  1:827289/140‑1 (MQ=255)                                                            tCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAACACCCCTCCCGGTTTGCGCCGGCGGGGTTTTGGCATCGTGTGTTGTTCCCGTCCCTACGGCGCATTGCCGACGCCCACCAGCacaccgccacag                                                                                >  1:173573/1‑135 (MQ=255)                                                               cggcctgtgctctggggCCGGCTTTCCGGGGGGTGCTTAAACGAAACACCCCGCCCGGTTCGCGCCGGCGGGGTTTTGGACTCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCCCACGCACGACGAcc                                                                             <  1:608255/129‑1 (MQ=255)                                                               aGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGCCGccc                                                                             >  1:922938/1‑143 (MQ=255)                                                                    ttttCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGCTGTCCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgc                                                                        >  2:739830/1‑143 (MQ=255)                                                                       tcttctGGGCCGACTTTCCGTGAGGTGTTTAAACGAACATCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGTCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgcggc                                                                     <  1:746707/143‑1 (MQ=255)                                                                       tcttctGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgcggc                                                                     <  2:572562/143‑1 (MQ=255)                                                                       ccttcttGGCCCACTTTCCTGCAGGGTCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgcggc                                                                     <  1:89814/142‑1 (MQ=255)                                                                         ttctGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGCGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCCTTGCCGACGACCACCACCCCACGCACGACGACCACTGcagcgg                                                                   >  1:44553/1‑143 (MQ=255)                                                                           gtgcgCCGACGTTCCGGGAGGTGCGTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGAt                                                                 <  2:28802/139‑1 (MQ=255)                                                                                ccGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCCCGTGGCCCACCCCGACGGATGgcgc                                                            >  1:396404/1‑143 (MQ=255)                                                                                   aCTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGt                                                         >  2:292431/1‑143 (MQ=255)                                                                                     tttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTg                                                       >  2:550303/1‑143 (MQ=255)                                                                                     tttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGGGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCGCGACGACCACTGcggcgggcgcggcagatg                                                       >  1:439267/1‑131 (MQ=255)                                                                                     tttCCGGGAGGTGCTCAAACGACACACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTg                                                       <  2:671392/143‑1 (MQ=255)                                                                                      ttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTgg                                                      >  2:795006/1‑143 (MQ=255)                                                                                      ttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTgg                                                      <  2:241350/143‑1 (MQ=255)                                                                                        ccGGGAGGTGCTTAAACGAGAACCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGGCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGgta                                                    <  1:895976/143‑1 (MQ=255)                                                                                           ggAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGGTTTGGAATCGTGTGCTGTTCCAGTCCCTGCGGCGCATTGCCGCCGACCACCACCACGCGCACGACGACCACTACGGCGGATGGCGCAgaggggggga                                                 >  1:235067/1‑134 (MQ=255)                                                                                             aGGTGCTTAGACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTagtagt                                               <  1:590768/143‑1 (MQ=255)                                                                                                tGCTTAAACGAAAATCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGtttt                                            <  2:90827/143‑1 (MQ=255)                                                                                                tGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGtttt                                            <  2:912772/143‑1 (MQ=255)                                                                                                 gCTTGAACGACAAGCCCCGCCCGGGTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTCCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGAAGCTGGTATTAGTTTTg                                           <  1:366705/143‑1 (MQ=255)                                                                                                  cgtAAACGATACAGCACGCCCGGTTCGCGCCGGCGGGTTATTGCAATACCTTGTTCGTCCAGTCCCTACTTGTCATTGCCGACGACCACCACCACCCGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGc                                          <  2:426340/141‑1 (MQ=255)                                                                                                   ttAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCg                                         >  2:620293/1‑143 (MQ=255)                                                                                                       aCGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCCTTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCCGTTGgcagcgaagaggcgggca                                     >  1:477032/1‑129 (MQ=255)                                                                                                               ccccGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGAGCACTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGaa                             <  1:355446/143‑1 (MQ=255)                                                                                                               ccccGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTGCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGaa                             <  2:241096/143‑1 (MQ=255)                                                                                                               ccccGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTGGTTCCAGTCGCCCGCATTCTGGGCCGACGACCACCGCGGCACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGaa                             <  2:1005477/143‑1 (MQ=255)                                                                                                                         tttGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGAAGTAGTCATTg                   >  2:615706/1‑143 (MQ=255)                                                                                                                               ccGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCTTTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGAAGTAGTCATTGGGGAcc             >  2:656231/1‑143 (MQ=255)                                                                                                                                     gggtcgtGGCATCGTGTGTTGCTCCAGGCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGAAGTAGTCATTGGGGACCttgttg       <  1:875021/137‑1 (MQ=255)                                                                                                                                     gggTTTTGGAATCTTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGGTGGTAGTAGTTTTGCGTGGAGCATGGAAGTAGTCATTGGGGACCttgttg       <  2:675262/143‑1 (MQ=255)                                                                                                                                          ttGGAATCGTTGGTTGTTCCATTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCAGTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGAAGTAGTCATTGGGGACCTTGTTGGtttt  <  1:935761/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             GATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGAAGTAGTCATTGGGGACCTTGTTGGTTTT  >  NC_000913/3852727‑3853006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.