| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,951,734 | Δ326 bp | pseudogene (194‑519/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3951734 | 3952059 | 326 | 48 [0] | [1] 48 | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3951733 | 0 (0.000) | 43 (1.090) | 36/268 | 0.1 | 100% | pseudogene (193/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| ? | NC_000913 | 3952060 = | 0 (0.000) | pseudogene (520/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted | |||||
CGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3951591‑3951733‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATCA > NC_000913/3952060‑3952200 cgtcccTCCTGGTGACGCTATCTACGCGCCGTTGTTGTTAAGACAACTGTCTGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGCGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAA < 2:102544/137‑1 CCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGAC > 1:629049/1‑143 agctCGGTTACGTTATCTTCGCGCCGTTGTTGTTAAAACAATTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCTCACACTCGCCCGGAAAGACCA < 2:44480/139‑1 gacgtcATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAG < 2:546499/137‑1 GCTATCTACGCGCCGTTGTTGTTAAAACAAATGTC‑GATCAGGTAATCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATAGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGG > 2:156060/1‑143 TCTACGAGCCCTCGTGGTTCGGACTACGGTCGGAGC‑GTAAGCCTGCGGAGTGCGGCGTGACCACAGCTGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACT < 2:587170/143‑1 ACGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑TTAACGCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGA < 1:686403/143‑1 CGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGAC < 2:192084/143‑1 CGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACAC > 1:197299/1‑143 CGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCCGCGGATTGCGTCGTGACCACAGATGTGGGGCACCACCAGATGCGGGCTGCGCAGCCCATCGCCCACACTCGCCCGGAACGACCAGGCTGAAGCGGCACTCGACACCcc > 2:698421/1‑141 TGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGTTTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGGCCAGGTTGAAGCGGGACACGACACCATGGTGAA > 2:300116/1‑143 TTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACACGACACCATGCTGAACA > 2:543952/1‑143 AACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGg > 1:184265/1‑142 ACTGTCGGAAC‑GAAAACCGGCAGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGAGAAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGG < 1:356760/143‑1 GATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACGAGATGTGGGCTGCGCAGCACCTCCCCCACCTTTCCCTGGATAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAGCAGTGATGGGCCCTACC > 1:454009/1‑143 ATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCAGACCT > 2:219925/1‑143 CCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACCCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATG < 2:325573/143‑1 GTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCGCACTCGCCCGGAAAGACCAGGTTGACGCGGCACTCGGCACCATGCTGAACGGTGGTGGGCCCTGCCGGCTTCCTGTttgcgtcggcg > 1:37332/1‑132 tccgCAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGTTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTG < 2:151313/139‑1 CACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCCGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGcg > 2:217877/1‑141 CACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCCTGCTGCACAGTGATCGGCCATACCTGCTTCATGTCTCAATAGACCAACTTGAG > 1:3775/1‑143 GTGGGGCAGTACCAGATGTGGGCTGCGCAGCACATCGCCCACCCTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCT < 2:364122/143‑1 GGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGGTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCCTACCTGCGTCATGTCTCAATCGGCGAACCTGGGGACGGCGGGC > 1:581188/1‑143 GGGCAGCACCAGATGTGGGCTGCGCAGCACAGCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGC < 2:30687/143‑1 AGCACCAGATGTGGGCTGCGCAGCACCTCGAACACATGCGCTCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCT < 1:492420/143‑1 AGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGCAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCCGCCCGCc > 2:82013/1‑142 ACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGTCACCATGCTGAACAGTGATGGGCCATACCTGCTTCCTGTCTCAATCGACGGACTTGAGAACGTCTGGCCGCTGGT > 2:362662/1‑143 ACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGACCTTGAGGACGTCTGGCCGCTGGT > 1:639636/1‑143 ACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGT < 2:197299/143‑1 cATGTGGGCTGCGCAGCACCTCGCCCACACCCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCG < 1:298363/142‑1 GATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCG > 1:642365/1‑143 GTGGGCTGCCCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCT < 1:502694/143‑1 GGCTGCTCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATTCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGATAACGTCTGGCCGCTGGTGCCGCCTGGC < 2:381376/143‑1 GGCTGCGCAGCACAGCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAATTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGC < 2:380699/143‑1 TGCGCAGCACGTCGCCCACCCTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGAGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCC < 2:261800/143‑1 GCGCAGCACATCGCCCACACTCGCCCGGAAGGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGCGCCaggcggcacca < 2:2545/143‑12 CGCAGCACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTTGCGCCcg > 1:281324/1‑141 CACATCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTCCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGCGCCACCTCGCGCCCGGAATT > 2:183042/1‑143 ATCGCCCCCACCCGCCCGGCAACACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATCCCTTCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAG < 1:246861/143‑1 TCGCCCACACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGA > 1:444154/1‑143 CACTCGCCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTG < 1:579508/143‑1 cgCGCCCGGAAACACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCGTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGA < 1:144396/141‑1 CTCGCCCGGAAAGACCACGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGACCGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGA < 1:10925/143‑1 CTCGACCGGCAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGA < 1:236413/143‑1 CCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAAT > 1:423933/1‑143 GAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGCGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTAT < 2:20609/143‑1 AAAGACCACGTTGAAGCGGCACTCGACACCCTGCTGAACAGTGATCGGCCATACCTGCTTCATGTCTCAACCGACGAACTTGAGCACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATC < 1:156060/143‑1 AAGACCAGGTTGAAGCGGCACTCGACACAATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAGTGTTGGAGAGATTATCA > 1:537229/1‑143 CGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATC‑GTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3951591‑3951733‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATCA > NC_000913/3952060‑3952200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |