Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,951,734 Δ326 bp pseudogene (194‑519/663 nt) ilvG → pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3951734 3952059 326 48 [0] [1] 48 ilvG pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39517330 (0.000)43 (1.090) 36/268 0.1 100% pseudogene (193/663 nt) ilvG pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted
?NC_000913 3952060 = 0 (0.000)pseudogene (520/663 nt) ilvG pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted

CGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCA  >  NC_000913/3951591‑3951874
                                                                                                                                               |                                                                                                                                             
cgtccctcctggtGACGCTATCTACGCGCCGTTGTTGTTAAGACAACTGTCTGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGCGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAA                                                                                                                                               <  2:102544‑M1/137‑1 (MQ=255)
   ccATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgac                                                                                                                                            >  1:629049‑M1/1‑140 (MQ=255)
     agctcggttACGTTATCTTCGCGCCGTTGTTGTTAAAACAATTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCTCACACTCGCCCGGAAAgacca                                                                                                                                          <  2:44480‑M1/139‑6 (MQ=255)
             gacgtcatctacgCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaag                                                                                                                                  <  2:546499‑M1/137‑14 (MQ=255)
                gCTATCTACGCGCCGTTGTTGTTAAAACAAATGTCGATCAGGTAATCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATAGCCCACACTCGCCCGGAAAgaccaggttgaagcgg                                                                                                                               >  2:156060‑M1/1‑127 (MQ=255)
                    tCTACGAGCCCTCGTGGTTCGGACTACGGTCGGAGCGTAAGCCTGCGGAGTGCGGCGTGACCACAGCTGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcact                                                                                                                           <  2:587170‑M1/143‑21 (MQ=255)
                       aCGCGCCGTTGTTGTTAAAACAACTGTCGGATCTTAACGCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcga                                                                                                                        <  1:686403‑M1/143‑24 (MQ=255)
                        cgcgCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgac                                                                                                                       <  2:192084‑M1/143‑25 (MQ=255)
                          cgcCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacac                                                                                                                     >  1:197299‑M1/1‑117 (MQ=255)
                             cGTTGTTGTTAAAACAACTGTCGGATCGTAAACCCGCGGATTGCGTCGTGACCACAGATGTGGGGCACCACCAGATGCGGGCTGCGCAGCCCATCGCCCACACTCGCCCGGAACgaccaggctgaagcggcactcgacacccc                                                                                                                  >  2:698421‑M1/1‑114 (MQ=255)
                                   tgttAAAACAACTGTCGGATCGTAAACCTGCGGTTTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAggccaggttgaagcgggacacgacaccatggtgaa                                                                                                            >  2:300116‑M1/1‑108 (MQ=255)
                                     ttAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcacacgacaccatgctgaaca                                                                                                          >  2:543952‑M1/1‑106 (MQ=255)
                                         aacaacTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgg                                                                                                      >  1:184265‑M1/1‑102 (MQ=255)
                                             acTGTCGGAACGAAAACCGGCAGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGAGAAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatggg                                                                                                  <  1:356760‑M1/143‑46 (MQ=255)
                                                    gATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACGAGATGTGGGCTGCGCAGCACCTCCCCCACCTTTCCCTGGATAgaccaggttgaagcggcactcgacaccatgctgagcagtgatgggccctacc                                                                                           >  1:454009‑M1/1‑91 (MQ=255)
                                                     aTCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccagacct                                                                                          >  2:219925‑M1/1‑90 (MQ=255)
                                                              ccTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACCCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatg                                                                                  <  2:325573‑M1/143‑62 (MQ=255)
                                                                          gtcgtGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCGCACTCGCCCGGAAAgaccaggttgacgcggcactcggcaccatgctgaacggtggtgggccctgccggcttcctgtttgcgtcggcg                                                                      >  1:37332‑M1/1‑70 (MQ=255)
                                                                                tccgcagatgTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccagtttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttg                                                                <  2:151313‑M1/139‑80 (MQ=255)
                                                                                  cacaGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgacccggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgcg                                                              >  2:217877‑M1/1‑62 (MQ=255)
                                                                                  cacaGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccctgctgcacagtgatcggccatacctgcttcatgtctcaatagaccaacttgag                                                              >  1:3775‑M1/1‑62 (MQ=255)
                                                                                         gtgGGGCAGTACCAGATGTGGGCTGCGCAGCACATCGCCCACCCTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtct                                                       <  2:364122‑M1/143‑89 (MQ=255)
                                                                                            gggCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccagggtgaagcggcactcgacaccatgctgaacagtgatgggccctacctgcgtcatgtctcaatcggcgaacctggggacggcgggc                                                    >  1:581188‑M1/1‑52 (MQ=255)
                                                                                            gggCAGCACCAGATGTGGGCTGCGCAGCACAGCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggc                                                    <  2:30687‑M1/143‑92 (MQ=255)
                                                                                                agcaCCAGATGTGGGCTGCGCAGCACCTCGAACACATGCGCTCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgct                                                <  1:492420‑M1/143‑96 (MQ=255)
                                                                                                agcaCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgcagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtccgcccgcc                                                >  2:82013‑M1/1‑48 (MQ=255)
                                                                                                   aCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgtcaccatgctgaacagtgatgggccatacctgcttcctgtctcaatcgacggacttgagaacgtctggccgctggt                                             >  2:362662‑M1/1‑45 (MQ=255)
                                                                                                   aCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaccttgaggacgtctggccgctggt                                             >  1:639636‑M1/1‑45 (MQ=255)
                                                                                                   aCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggt                                             <  2:197299‑M1/143‑99 (MQ=255)
                                                                                                       gATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccg                                         >  1:642365‑M1/1‑41 (MQ=255)
                                                                                                       catGTGGGCTGCGCAGCACCTCGCCCACACCCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccg                                         <  1:298363‑M1/142‑103 (MQ=255)
                                                                                                          gtgGGCTGCCCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcct                                      <  1:502694‑M1/143‑106 (MQ=255)
                                                                                                             ggCTGCTCAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccattctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgataacgtctggccgctggtgccgcctggc                                   <  2:381376‑M1/143‑109 (MQ=255)
                                                                                                             ggCTGCGCAGCACAGCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaatttgagaacgtctggccgctggtgccgcctggc                                   <  2:380699‑M1/143‑109 (MQ=255)
                                                                                                                tGCGCAGCACGTCGCCCACCCTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagagatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgcc                                <  2:261800‑M1/143‑112 (MQ=255)
                                                                                                                 gcgcAGCACATCGCCCACACTCGCCCGGAAGgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggcgccaggcggcacca                               <  2:2545‑M1/143‑113 (MQ=255)
                                                                                                                  cgcAGCACATCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgccttgcgcccg                              >  1:281324‑M1/1‑30 (MQ=255)
                                                                                                                       cacaTCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgctccatgtctcaatcgacgaacttgagaacgtctggccgctggcgccacctcgcgcccggaatt                         >  2:183042‑M1/1‑25 (MQ=255)
                                                                                                                          aTCGCCCCCACCCGCCCGGCAAcaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatcccttcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcag                      <  1:246861‑M1/143‑122 (MQ=255)
                                                                                                                           tCGCCCACACTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcaga                     >  1:444154‑M1/1‑21 (MQ=255)
                                                                                                                                  cacTCGCCCGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttg              <  1:579508‑M1/143‑130 (MQ=255)
                                                                                                                                    cgcgcCCGGAAAcaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcgtcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttgga            <  1:144396‑M1/141‑132 (MQ=255)
                                                                                                                                    cTCGCCCGGAAAgaccacgttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaccgtctggccgctggtgccgcctggcgccagtaattcagaaatgttgga            <  1:10925‑M1/143‑132 (MQ=255)
                                                                                                                                    cTCGACCGGCAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttgga            <  1:236413‑M1/143‑132 (MQ=255)
                                                                                                                                         ccGGAAAgaccaggttgaagcggcactcgacaccatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttggagaaat       >  1:423933‑M1/1‑7 (MQ=255)
                                                                                                                                            gAAAgaccaggttgaagcggcactcgacaccatgctgaacagcgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttggagaaattat    <  2:20609‑M1/143‑140 (MQ=255)
                                                                                                                                             aaagaccacgttgaagcggcactcgacaccctgctgaacagtgatcggccatacctgcttcatgtctcaaccgacgaacttgagcacgtctggccgctggtgccgcctggcgccagtaattcagaaatgttggagaaattatc   <  1:156060‑M1/143‑141 (MQ=255)
                                                                                                                                              aagaccaggttgaagcggcactcgacacaatgctgaacagtgatgggccatacctgcttcatgtctcaatcgacgaacttgagaacgtctggccgctggtgccgcctggcgccagtaattcagaagtgttggagagattatca  >  1:537229‑M1/1‑2 (MQ=255)
                                                                                                                                               |                                                                                                                                             
CGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCA  >  NC_000913/3951591‑3951874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: