mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,947,591 | 0 | A | . | 33.3% | 32.6 / 17.9 | 18 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.2% | 94.1 / 58.9 | 78 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 781369 = | 96 (0.980) | 25 (0.260) +G |
13/284 | 8.3 | 28.5% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521128 | 30 (0.310) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 781369 = | 96 (0.980) | 20 (0.210) +GAG |
8/280 | 10.4 | 22.7% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 43 (0.440) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 2700550 = | 130 (1.320) | 4 (0.050) | 4/248 | 11.8 | 3.6% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | 2700601 = | 100 (1.170) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | 4127239 = | 104 (1.060) | 4 (0.040) | 4/262 | 12.2 | 4.0% | intergenic (+14/+47) | rpmE/yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| ? | NC_000913 | 4127265 = | 99 (1.100) | intergenic (+40/+21) | rpmE/yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein | |||||
| * | ? | NC_000913 | 2729475 = | 51 (0.520) | 4 (0.040) | 4/266 | 12.4 | 7.3% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 54 (0.590) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 41 (0.420) | 4 (0.040) | 4/266 | 12.4 | 8.9% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 44 (0.480) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 4297505 = | 96 (0.980) | 4 (0.040) | 4/270 | 12.5 | 4.3% | coding (1862/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit |
| ? | NC_000913 | 4297539 = | 89 (0.960) | coding (1828/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit | |||||
| * | ? | NC_000913 | 3004852 = | 95 (0.970) | 4 (0.040) | 4/272 | 12.5 | 4.4% | coding (935/1779 nt) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| ? | NC_000913 | 3004880 = | 84 (0.900) | coding (907/1779 nt) | ygeV | putative sigma‑54‑interacting transcriptional activator | |||||
| * | ? | NC_000913 | 4022006 = | 93 (0.950) | 3 (0.030) | 3/272 | 13.3 | 3.1% | coding (62/270 nt) | tatA | TatABCE protein translocation system subunit |
| ? | NC_000913 | 4022046 = | 99 (1.060) | coding (102/270 nt) | tatA | TatABCE protein translocation system subunit | |||||
| * | ? | NC_000913 | = 2744871 | 73 (0.740) | 3 (0.030) | 3/274 | 13.3 | 3.9% | coding (469/768 nt) | trmD | tRNA m(1)G37 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 2744877 | 76 (0.810) | coding (463/768 nt) | trmD | tRNA m(1)G37 methyltransferase, SAM‑dependent | |||||