mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.8% | 105.9 / 74.9 | 88 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 72 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 781369 = | 81 (0.880) | 25 (0.270) +G |
12/282 | 7.9 | 32.6% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 23 (0.250) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 781577 = | 89 (0.970) | 44 (0.480) +G |
9/282 | 9.1 | 44.2% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 23 (0.250) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 780554 = | 101 (1.100) | 22 (0.240) +G |
9/282 | 9.1 | 26.3% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 23 (0.250) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 2753972 = | 104 (1.130) | 6 (0.070) | 6/256 | 9.9 | 6.5% | intergenic (+26/+36) | bamE/ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein |
| ? | NC_000913 | 2754001 = | 80 (0.970) | intergenic (+55/+7) | bamE/ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein | |||||
| * | ? | NC_000913 | 696399 = | 90 (0.980) | 7 (0.080) +TAATG |
7/274 | 9.9 | 11.7% | intergenic (+123/+31) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | NC_000913 | 696542 = | 20 (0.220) | noncoding (75/75 nt) | glnV | tRNA‑Gln | |||||
| * | ? | NC_000913 | 3423376 = | 130 (1.420) | 8 (0.090) | 6/280 | 10.5 | 6.8% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213162 | 92 (1.020) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 2716029 | 74 (0.810) | 5 (0.060) | 5/260 | 10.6 | 6.6% | intergenic (+19/+37) | eamB/grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| ? | NC_000913 | = 2716033 | 73 (0.870) | intergenic (+23/+33) | eamB/grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor | |||||
| * | ? | NC_000913 | = 2304952 | NA (NA) | 9 (0.100) +C |
5/282 | 11.2 | NA | noncoding (536/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2305105 | NA (NA) | intergenic (+712/+3) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain | |||||
| * | ? | NC_000913 | = 2304839 | 29 (0.320) | 9 (0.100) +C |
5/282 | 11.2 | 23.8% | noncoding (423/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2305105 | NA (NA) | intergenic (+712/+3) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain | |||||
| * | ? | NC_000913 | = 993253 | 97 (1.060) | 4 (0.050) | 4/260 | 11.2 | 4.3% | intergenic (+19/+24) | pepN/ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| ? | NC_000913 | = 993259 | 91 (1.080) | intergenic (+25/+18) | pepN/ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase | |||||