mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 40.5% | 78.5 / 97.2 | 89 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 56 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2025229 = | 107 (1.110) | 7 (0.080) | 7/252 | 9.0 | 6.3% | noncoding (85/87 nt) | dsrA | sRNA antisense regulator enhances translation of RpoS, Hfq‑dependent |
| ? | NC_000913 | 2025254 = | 109 (1.220) | noncoding (60/87 nt) | dsrA | sRNA antisense regulator enhances translation of RpoS, Hfq‑dependent | |||||
| * | ? | NC_000913 | 1552011 = | 127 (1.320) | 10 (0.110) | 7/256 | 9.1 | 7.7% | intergenic (+20/+387) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 1552221 = | NA (NA) | intergenic (+230/+177) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | = 3569758 | 91 (0.950) | 7 (0.080) | 7/262 | 9.3 | 7.1% | coding (1562/1974 nt) | glgX | glycogen debranching enzyme |
| ? | NC_000913 | = 3569778 | 96 (1.040) | coding (1542/1974 nt) | glgX | glycogen debranching enzyme | |||||
| * | ? | NC_000913 | = 232564 | 100 (1.040) | 6 (0.070) | 6/248 | 9.4 | 6.2% | intergenic (+15/+33) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D |
| ? | NC_000913 | = 232571 | 89 (1.020) | intergenic (+22/+26) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D | |||||
| * | ? | NC_000913 | 1115624 = | NA (NA) | 6 (0.070) | 6/250 | 9.5 | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | NC_000913 | 1115655 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | NC_000913 | = 4549883 | 98 (1.020) | 3 (0.040) +40 bp |
3/192 | 9.6 | 4.2% | intergenic (+173/+70) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter |
| ? | NC_000913 | 4606556 = | NA (NA) | intergenic (‑155/+113) | leuQ/rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 474028 = | 92 (0.960) | 6 (0.070) | 6/260 | 9.7 | 6.4% | coding (1063/1287 nt) | amtB | ammonium transporter |
| ? | NC_000913 | 474049 = | 89 (0.970) | coding (1084/1287 nt) | amtB | ammonium transporter | |||||
| * | ? | NC_000913 | = 228726 | 69 (0.720) | 9 (0.100) | 6/260 | 9.7 | 12.8% | intergenic (+64/‑30) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228738 | 57 (0.620) | intergenic (+76/‑18) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 1203752 | 119 (1.240) | 6 (0.060) | 6/270 | 9.9 | 5.2% | coding (485/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 1203784 | 100 (1.050) | coding (517/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | = 3376260 | 111 (1.150) | 6 (0.070) | 5/248 | 10.0 | 5.7% | intergenic (+24/+19) | dcuD/sspB | putative transporter/ClpXP protease specificity enhancing factor |
| ? | NC_000913 | = 3376265 | 98 (1.120) | intergenic (+29/+14) | dcuD/sspB | putative transporter/ClpXP protease specificity enhancing factor | |||||