| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 111477 = | NA (NA) | 7 (0.220) | 7/230 | 2.8 | 22.6% | noncoding (48/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913 | 111509 = | 24 (0.750) | noncoding (80/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
GAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCT > NC_000913/111350‑111617 | ccgcacgtaggcctgataagacgcggacagcgtcgcatcaggcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGcc < 8:86220‑M1/3‑1 (MQ=255)ccgcacgtaggcctgataagacgcggacagcgtcgcatcaggcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGcc > 7:86220‑M1/128‑130 (MQ=255) tGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTg > 6:91337/1‑140 (MQ=255) tGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTg < 5:91337/140‑1 (MQ=255) tCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 2:141888/149‑1 (MQ=255) tCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAgg > 5:17089/1‑149 (MQ=255) gcctgataagacgcggacagcgtcgcatcaggcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGCCTGATGCGACGCTGGCGCGTCTTATCAGGc > 1:85493‑M1/118‑149 (MQ=255) tGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGgcgc < 1:159807/134‑1 (MQ=255) tGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGgcgc > 2:159807/1‑134 (MQ=255) cggacagcgtcgcatcaggcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGCCTGAt < 3:86748‑M1/7‑1 (MQ=255) cggacagcgtcgcatcaggcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGCCTGAt > 4:86748‑M1/105‑111 (MQ=255) aTGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCt < 7:10550/148‑1 (MQ=255) cGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTg < 8:133406/114‑1 (MQ=255) cGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTg > 7:133406/1‑114 (MQ=255) gatgatTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTc > 6:104262/1‑120 (MQ=255) gatgatTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTc < 5:104262/120‑1 (MQ=255) gatgatTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCa > 4:68011/1‑149 (MQ=255) atcaggcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGCCt < 6:126687‑M1/4‑1 (MQ=255) atcaggcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGCCt > 5:126687‑M1/92‑95 (MQ=255) atcaggcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGCCTGAt > 2:99384‑M1/92‑98 (MQ=255) atcaggcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGCCTGAt < 1:99384‑M1/7‑1 (MQ=255) tCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAg < 2:162453/119‑1 (MQ=255) tCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAg > 1:162453/1‑119 (MQ=255) ccGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATaaa < 3:68011/148‑1 (MQ=255) gccagccaATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAg > 4:137772/1‑116 (MQ=255) gccagccaATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAAttt > 8:82539/1‑149 (MQ=255) gccaATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGAt < 8:17725/124‑1 (MQ=255) gccaATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGAt > 7:17725/1‑124 (MQ=255) aTGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGt < 7:82539/149‑1 (MQ=255) aaCCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAg < 5:119202/148‑1 (MQ=255) gcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGCCTGATAAGACGCTGGCGCGTCTTATCAgg > 7:132477‑M1/62‑92 (MQ=255) gcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttagGCCTGATAAGACGCTGGCGCGTCTTATCAgg < 8:132477‑M1/31‑1 (MQ=255) tAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGa > 3:21765/1‑148 (MQ=255) tCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAttt < 6:17089/149‑1 (MQ=255) ggCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGgcgc > 3:149983/1‑54 (MQ=255) ggCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGgcgc < 4:149983/54‑1 (MQ=255) gTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGc > 4:75171/1‑149 (MQ=255) gccgcATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGAt < 3:75171/148‑1 (MQ=255) atgagttagaaatccctttagGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGc > 6:51080‑M1/22‑139 (MQ=255) atgagttagaaatccctttagGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGc < 5:51080‑M1/118‑1 (MQ=255) tCCGACATTCGCACACGATGCCTGATGTGACGCTGGCGCGCCTTATCAGGCCTAAAGGGATTTCTAACTCAATGATAAATTAGTTTTTGTAGGTCGGATAAGGCGTACACGCCGCATCCGACATATGCACAAGATGCCTGATGCGACGc > 3:11597/1‑149 (MQ=38) cGACATTCGCACACGATGCCTGATGTGACGCTGGTGCGCTTTTTCAGGCCTATATGTATTTCTATCTCATTTATATATTTTTTTTTGTATGTCTGATAAGGCGTTCACGCTGTATCCGACATTTGCACAAGATGCCTGATGCGACGCt < 4:11597/148‑1 (MQ=25) gaaatccctttagGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAg > 6:91338‑M1/14‑86 (MQ=255) gaaatccctttagGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAg < 5:91338‑M1/73‑1 (MQ=255) ttCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAc < 2:123909/115‑1 (MQ=37) ttCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAc > 1:123909/1‑115 (MQ=37) acacGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCt > 4:128037/1‑148 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCAcgc < 3:82088/96‑1 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCAcgc > 4:82088/1‑96 (MQ=255) | GAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCT > NC_000913/111350‑111617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |