| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 111477 = | NA (NA) | 7 (0.220) | 7/230 | 2.8 | 22.6% | noncoding (48/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913 | 111509 = | 24 (0.750) | noncoding (80/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
ATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGG > NC_000913/111375‑111635 | aTGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCt < 7:10550/148‑1 (MQ=255) gatgatTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCa > 4:68011/1‑149 (MQ=255) ccGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATaaa < 3:68011/148‑1 (MQ=255) gccagccaATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAAttt > 8:82539/1‑149 (MQ=255) gcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttaggcctgatgcgacgctggcgcgtcttatcaggcCTAAAGGGATTTCTAACTCAt > 6:51080‑M2/119‑139 (MQ=255) gcatcttgtgcaaatgtcggatgcggcgtgaacgccttatccgacctacaaaaacaaatttatcaatgagttagaaatccctttaggcctgatgcgacgctggcgcgtcttatcaggcCTAAAGGGATTTCTAACTCAt < 5:51080‑M2/21‑1 (MQ=255) gccaATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGAt < 8:17725/124‑1 (MQ=255) gccaATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGAt > 7:17725/1‑124 (MQ=255) aTGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGt < 7:82539/149‑1 (MQ=255) aaCCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAg < 5:119202/148‑1 (MQ=255) tAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGa > 3:21765/1‑148 (MQ=255) tCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAttt < 6:17089/149‑1 (MQ=255) ctacaaaaacaaatttatcaatgagttagaaatccctttaggcctgatgcgacgctggcgcgtcttatcaggcCTAAAGGGATTTc > 6:91338‑M2/74‑86 (MQ=255) ctacaaaaacaaatttatcaatgagttagaaatccctttaggcctgatgcgacgctggcgcgtcttatcaggcCTAAAGGGATTTc < 5:91338‑M2/13‑1 (MQ=255) gTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGc > 4:75171/1‑149 (MQ=255) gccgcATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGAt < 3:75171/148‑1 (MQ=255) atgagttagaaatccctttagGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGc < 5:51080‑M1/118‑1 (MQ=255) atgagttagaaatccctttagGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGc > 6:51080‑M1/22‑139 (MQ=255) tCCGACATTCGCACACGATGCCTGATGTGACGCTGGCGCGCCTTATCAGGCCTAAAGGGATTTCTAACTCAATGATAAATTAGTTTTTGTAGGTCGGATAAGGCGTACACGCCGCATCCGACATATGCACAAGATGCCTGATGCGACGc > 3:11597/1‑149 (MQ=38) cGACATTCGCACACGATGCCTGATGTGACGCTGGTGCGCTTTTTCAGGCCTATATGTATTTCTATCTCATTTATATATTTTTTTTTGTATGTCTGATAAGGCGTTCACGCTGTATCCGACATTTGCACAAGATGCCTGATGCGACGCt < 4:11597/148‑1 (MQ=25) gaaatccctttagGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAg > 6:91338‑M1/14‑86 (MQ=255) gaaatccctttagGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAg < 5:91338‑M1/73‑1 (MQ=255) ttCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAc < 2:123909/115‑1 (MQ=37) ttCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAc > 1:123909/1‑115 (MQ=37) acacGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCt > 4:128037/1‑148 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCAcgc < 3:82088/96‑1 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCAcgc > 4:82088/1‑96 (MQ=255) gcctgataagacgcgccagcgtcgcatcaggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGc > 1:85493‑M2/33‑149 (MQ=255) cctgataagacgcgccagcgtcttatcaggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCAcgc < 8:132477‑M2/61‑1 (MQ=255) cctgataagacgcgccagcgtcttatcaggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCAcgc > 7:132477‑M2/32‑92 (MQ=255) CTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGcc < 7:88644‑M1/148‑1 (MQ=255) CTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGcc < 7:128760‑M1/148‑1 (MQ=255) TGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGc > 5:142896‑M1/1‑146 (MQ=255) TGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGc < 6:142896‑M1/146‑1 (MQ=255) ATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTAc > 8:88644‑M1/1‑148 (MQ=255) cGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGc < 4:21765/149‑1 (MQ=255) gACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGt > 7:41230/1‑62 (MQ=255) gACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGt < 8:41230/62‑1 (MQ=255) tATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAg > 6:83801/1‑123 (MQ=255) tATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAg < 5:83801/123‑1 (MQ=255) atcaggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGAt > 2:99384‑M2/8‑98 (MQ=255) atcaggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGAt < 1:99384‑M2/91‑1 (MQ=255) atcaggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCcg > 4:86748‑M2/8‑111 (MQ=255) atcaggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCcg < 3:86748‑M2/104‑1 (MQ=255) aggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGAt > 5:126687‑M2/5‑95 (MQ=255) aggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGAt < 6:126687‑M2/91‑1 (MQ=255) ggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCgg > 7:86220‑M2/4‑130 (MQ=255) ggcCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCgg < 8:86220‑M2/127‑1 (MQ=255) | ATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCTACGTGCGG > NC_000913/111375‑111635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |