mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.9% | 104.1 / 42.0 | 61 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.160) | 6/246 | 3.9 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1335765 | 44 (1.080) | 10 (0.250) | 5/264 | 4.5 | 18.5% | intergenic (+307/‑66) | yciX/acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1335762 = | 43 (1.060) | 13 (0.320) | 5/264 | 4.5 | 23.2% | intergenic (+304/‑69) | yciX/acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2033156 | 48 (1.180) | 4 (0.100) | 4/250 | 4.7 | 8.5% | coding (329/366 nt) | yedR | inner membrane protein |
| ? | NC_000913 | = 2033184 | 41 (1.060) | coding (301/366 nt) | yedR | inner membrane protein | |||||
| * | ? | NC_000913 | = 1846868 | 46 (1.130) | 4 (0.100) | 4/250 | 4.7 | 8.1% | coding (93/1962 nt) | topB | DNA topoisomerase III |
| ? | NC_000913 | = 1846891 | 47 (1.220) | coding (70/1962 nt) | topB | DNA topoisomerase III | |||||
| * | ? | NC_000913 | 369674 = | 36 (0.880) | 4 (0.100) | 4/252 | 4.8 | 11.1% | coding (1064/1665 nt) | mhpA | 3‑(3‑hydroxyphenyl)propionate hydroxylase |
| ? | NC_000913 | 369700 = | 30 (0.770) | coding (1090/1665 nt) | mhpA | 3‑(3‑hydroxyphenyl)propionate hydroxylase | |||||
| * | ? | NC_000913 | 1335762 = | 43 (1.060) | 6 (0.150) | 4/264 | 4.9 | 12.2% | intergenic (+304/‑69) | yciX/acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| ? | NC_000913 | = 2067353 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1794268 = | 42 (1.030) | 5 (0.130) | 3/250 | 5.2 | 11.4% | coding (885/981 nt) | btuC | vitamin B12 ABC transporter permease |
| ? | NC_000913 | 1794318 = | 38 (0.990) | coding (835/981 nt) | btuC | vitamin B12 ABC transporter permease | |||||
| * | ? | NC_000913 | 1036413 = | 38 (0.930) | 3 (0.080) | 3/250 | 5.2 | 7.3% | coding (60/399 nt) | hyaE | putative HyaA chaperone |
| ? | NC_000913 | 1036445 = | 40 (1.040) | coding (92/399 nt) | hyaE | putative HyaA chaperone | |||||
| * | ? | NC_000913 | = 1396537 | NA (NA) | 8 (0.200) | 3/260 | 5.4 | 15.0% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428272 = | 46 (1.130) | noncoding (523/1196 nt) | IS5 | repeat region | |||||