Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 75,779 Δ14 bp coding (1508‑1521/1656 nt) sgrR ← transcriptional DNA‑binding transcriptional activator of sgrS sRNA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 75779 75792 14 21 [0] [0] 23 sgrR transcriptional DNA‑binding transcriptional activator of sgrS sRNA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 757780 (0.000)19 (0.630) 17/232 0.9 100% coding (1522/1656 nt) sgrR transcriptional DNA‑binding transcriptional activator of sgrS sRNA
?NC_000913 75793 = 0 (0.000)coding (1507/1656 nt) sgrR transcriptional DNA‑binding transcriptional activator of sgrS sRNA

TGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGCCAGTCAATGGGAATGCAATGTTGTAGCAGTGGCACTTCGCATAAATGTGCGAAAACAGAGAAGTCCAGCGGCAGGGTA  >  NC_000913/75647‑75923
                                                                                                                                   |                                                                                                                                                 
tGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattc                                                                                                                                  <  1:109611‑M1/149‑18 (MQ=255)
               aaaCCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattc                                                                                                                                  >  6:151814‑M1/1‑117 (MQ=255)
               aaaCCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattc                                                                                                                                  <  5:151814‑M1/134‑18 (MQ=255)
                 aCCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgcca                                                                                                                 <  2:120725‑M1/149‑35 (MQ=255)
                                             gAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagt                                                                                          <  3:110647‑M1/144‑58 (MQ=255)
                                             gAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagt                                                                                          >  4:110647‑M1/1‑87 (MQ=255)
                                                    agtatgcGCGGCCTGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatg                                                                               >  3:12396‑M1/4‑80 (MQ=255)
                                                               gCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtag                                                                    >  8:119453‑M1/1‑69 (MQ=255)
                                                                    gcATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgc                                                                                              >  5:15184‑M1/1‑64 (MQ=255)
                                                                    gcATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgc                                                                                              <  6:15184‑M1/117‑54 (MQ=255)
                                                                          tGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttc                                                        >  3:50546‑M1/1‑58 (MQ=255)
                                                                                           aTCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaaaa                                       >  3:28640‑M1/1‑41 (MQ=255)
                                                                                                ccAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaaaacagag                                  <  4:50546‑M1/149‑114 (MQ=255)
                                                                                                  aGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgca                                                     <  7:21048‑M1/128‑95 (MQ=255)
                                                                                                  aGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgca                                                     >  8:21048‑M1/1‑34 (MQ=255)
                                                                                                      gtgCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaa                                         <  7:43501‑M1/136‑107 (MQ=255)
                                                                                                      gtgCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaa                                         >  8:43501‑M1/1‑30 (MQ=255)
                                                                                                                     cATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcga                                          >  5:92926‑M1/1‑15 (MQ=255)
                                                                                                                     cATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcga                                          <  6:92926‑M1/120‑106 (MQ=255)
                                                                                                                             tGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaaaacagagaagtccagcggcagggtaaagttggcgc      <  4:12396‑M1/148‑142 (MQ=255)
                                                                                                                                tGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaaaacagagaagtccagcggcagggtaaagttggcgctgtt  <  7:119453‑M1/149‑146 (MQ=255)
                                                                                                                                   |                                                                                                                                                 
TGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGCCAGTCAATGGGAATGCAATGTTGTAGCAGTGGCACTTCGCATAAATGTGCGAAAACAGAGAAGTCCAGCGGCAGGGTA  >  NC_000913/75647‑75923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.