New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3895233	44 (0.970)	3 (0.070)	3/258	6.6	7.2%	intergenic (+15/+39)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
	?	NC_000913	= 3895244	37 (0.890)					intergenic (+26/+28)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGA  >  NC_000913/3895109‑3895382                                                                                                                                         |                                                                                                                                            aGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGGTCTACATAAACACCCCGCCA‑GCAATCATGCATGGCg‑gg                                                                                                                                     >  1:305444/1‑143 (MQ=255) aGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCg‑gg                                                                                                                                     <  1:141363/143‑1 (MQ=255)  gAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACAACATGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGt                                                                                                                                    >  1:824884/1‑143 (MQ=255)   aaCAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGtt                                                                                                                                   >  1:771006/1‑143 (MQ=255)       aaGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTa                                                                                                                               <  1:497265/143‑1 (MQ=255)        aGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATGAAAAACCCGCCA‑GCAATCATGCATGGCG‑GTTTTTTaa                                                                                                                              >  1:352988/1‑143 (MQ=255)         gtcgATCCGCAAAGCGGAGAAGTGATTGATCAGGGTACGATGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAAc                                                                                                                             <  1:165895/140‑1 (MQ=255)          ttGATCGGCCACCCGGAGGCGTCTTGGGTCAGGGTTGGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGTGTTTATTCAGCGAGTTTAGATGTAAATAAAAAACCCGCCATGCATGATTGC‑TGGCG‑GGttttttatt                                                                                                                            <  2:323351/143‑5 (MQ=16)           tGATCGGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAGACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAAcgc                                                                                                                           <  2:824369/143‑1 (MQ=255)             aTCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACgcgc                                                                                                                         <  2:28668/143‑1 (MQ=255)                   aaaCCGGAGGAGGGATTGATCAGGGGACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGa                                                                                                                   <  2:26732/143‑1 (MQ=255)                   aaaCCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGa                                                                                                                   >  1:398179/1‑143 (MQ=255)                       cGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCCATCATGCATGGCG‑GGTTTATAACGCGCTATCGAtttt                                                                                                               >  2:535674/1‑143 (MQ=255)                         gagaAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCGATTGACCGCATACGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAGAACCCGCCA‑GCAATCACGCACGGCG‑GGGTTTTCACACGCTGTCGacgatag                                                                                                             >  2:242011/1‑137 (MQ=255)                              gTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGc                                                                                                        >  1:716400/1‑143 (MQ=255)                                gattgatCAGGGTACGCTGGACCACCTGACCGGGAAATTGACCGCATTAGCTAATTACACGTGTTTTTTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGt                                                                                                      <  1:380954/143‑1 (MQ=255)                                        aGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAg                                                                                              >  1:168174/1‑143 (MQ=255)                                              cGCTGGACCACCTGACCGGGCAAGTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATc                                                                                        <  1:60753/143‑1 (MQ=255)                                               gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCt                                                                                       <  1:284588/143‑1 (MQ=255)                                               gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAACCt                                                                                       >  1:481091/1‑143 (MQ=255)                                                   gACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAg                                                                                   <  2:606964/143‑1 (MQ=255)                                                    accaccTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAgg                                                                                  >  1:673644/1‑143 (MQ=255)                                                              cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAACAGCCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAcagca                                                                        <  1:126558/143‑1 (MQ=255)                                                                ggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACagcagc                                                                      >  1:244014/1‑143 (MQ=255)                                                                ggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCAATTCTAGTCAGCGTCGATAAAGACAATCCTCCGGCTAAACagcagc                                                                      >  2:133231/1‑143 (MQ=255)                                                                  cAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTAAAAGGACATTCGTGAGTAGTGAGCGTCGATAAAGACAAGCTTCAGGATAAACAGCAgcgc                                                                    >  1:821215/1‑143 (MQ=255)                                                                   aaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATCTTAGTGCGCGGCGATAAAGACAAGCTTCAGCCTACACAGCCGCGCa                                                                   >  2:617571/1‑143 (MQ=255)                                                                   aaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATCCATGGCA‑GGTCTTGAACGCGCTCTCAACTTTAATGCACGTCGATACAGACAACCTCCAGGCTAAACAGCGGAGCa                                                                   >  2:197942/1‑143 (MQ=255)                                                                        aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATATCCGTGAGCGTCGATAAAGACAATCTTCAGGCTCAACAGCAGCGCAACgat                                                              >  2:803405/1‑143 (MQ=255)                                                                         ccGCATTCGGTGAATTTATTCACCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTATTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACgatg                                                             <  2:429522/143‑1 (MQ=255)                                                                          cacATTTGGGGAGGTTAGTCAGCGAGTTAAGAGCTAAATAAAAACCCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACgatga                                                            <  2:70235/141‑1 (MQ=255)                                                                            gaTTCGGTGAGTTTATTCAGCGAGTTATGGTCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGAtt                                                          <  2:663783/142‑1 (MQ=255)                                                                              tttGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCGCGGCATTCAACG‑GCGATCGCAAATAGATAACCAACACAGAGACAATCTTCACGGTAACCAGCAGCGCAACGATGATCAc                                                        >  2:806462/1‑143 (MQ=255)                                                                                       tttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATACAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACAGGCt                                               >  1:107698/1‑143 (MQ=255)                                                                                       tttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCt                                               >  1:593857/1‑143 (MQ=255)                                                                                       tttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGAAACGATGATTACGCACggggt                                               >  1:133004/1‑141 (MQ=255)                                                                                                          ccTAAACAAAAACCCCGCCA‑GCAATCATGCATGGCC‑GGTTTTTAACGCGCTATCGACTTTAGTGAGCGTCGACAAAGACAATCTTCAGGATAAACAGCAGCGCAACGCTGATTACGCACGGGCTTAGATCTCGCAGACGTCCg                            <  1:527667/142‑1 (MQ=255)                                                                                                              aataaaAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGAGCACGCAGAGGTCCGGGAc                        >  1:241987/1‑143 (MQ=255)                                                                                                                       cccGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtca               >  1:472573/1‑143 (MQ=255)                                                                                                                          gCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtcatca            >  2:774300/1‑143 (MQ=255)                                                                                                                               ggatgcatgcatgGGG‑GGTGCGTAACGCGCTATCGATTTTACCGAGCGTCGATAAAGACAATCGTCAGGACAAACCGCAGCGCAACGATGATTACACACGCCCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCa        <  2:57534/138‑1 (MQ=255)                                                                                                                                     atgcatgGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGga  <  1:605271/143‑1 (MQ=255)                                                                                                                                         |                                                                                                                                            AGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGA  >  NC_000913/3895109‑3895382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.