New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3148956	38 (0.910)	6 (0.150)	5/266	5.0	14.0%	intergenic (+19/+21)	gpr/yqhA	L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein
	?	NC_000913	= 3148961	38 (0.970)					intergenic (+24/+16)	gpr/yqhA	L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATCCATAA  >  NC_000913/3148817‑3149098                                                                                                                                            |                                                                                                                                               aCTAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAACCGGGGGCAGGCGCCCACCGATAAATGACCTGATAATAACGGGCGCGCGa                                                                                                                                             >  2:143941/1‑143 (MQ=255)  gtAGTGGAGGGCGTGCAGGCGGTGAAGAATCTGACATTTAGCACCATGGAGCTGGCGCAGATTGATCAGCACATCCCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGaa                                                                                                                                            <  2:499410/142‑1 (MQ=255)   tAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGATGAAACTGTGGCAGGCGTCTTCCGATAAACGACCTGTCAATAACCGGCGCGCGAAc                                                                                                                                           >  2:569933/1‑143 (MQ=255)          gaACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAAATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGACCCGAGccc                                                                                                                                    >  2:38800/1‑143 (MQ=255)              gTGCAGGCGCTGAATAAGCGGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGACAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAat                                                                                                                                <  2:194635/143‑1 (MQ=255)               tGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATCGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAatc                                                                                                                               <  1:630524/143‑1 (MQ=255)                           ataatCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGAtt                                                                                                                   <  1:698911/143‑1 (MQ=255)                               tCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCGGAGCAGAGATTATGa                                                                                                               >  2:211735/1‑143 (MQ=255)                                 tGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATACATGAGCTGTCAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACg                                                                                                             >  1:172238/1‑143 (MQ=255)                                         cggagcAACGAGCTGGCGCAGATTGATCAGCGTAGCTGCGATGGCGAGCTGAATCTGTGTGAGGCGTCTTCCGATGAATGACGGGTTAATAACGGGCGCGTGAACCGAGCCCGAATCAGATCAGTGATTATGACGagtcagtc                                                                                                     <  2:75855/138‑1 (MQ=255)                                           cACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCgg                                                                                                   >  1:327717/1‑143 (MQ=255)                                                   aGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGCGCTGAATCTGTGGCACGCGCCTTCCGAGAAGTGACCCGTTAATAACGGGCGCGCGCACCGCGCCCGAATCAGATCAGTCACTATCGCGAGCCAGTCGGTCAAGaca                                                                                           >  2:282148/1‑141 (MQ=255)                                                      tGGCGCCGATTTATGAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGcc                                                                                        <  2:69/143‑1 (MQ=255)                                                        gcgcAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCa                                                                                      >  1:95546/1‑143 (MQ=255)                                                                 gATCAGCATATCGCCGATGGCGGGCGGAATCTGTGGCAGGCGTCTGCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATg                                                                             <  2:139849/143‑1 (MQ=255)                                                                   tCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGCCACGCTAGCCCATCACAAATGCa                                                                           >  2:735087/1‑143 (MQ=255)                                                                   tCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGACAGGCGGCCAAGCTAGCCCATCACCAATGCa                                                                           >  2:331403/1‑143 (MQ=255)                                                                    cAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGACCAGTGATTATGACGAGACAGTCGGTCAAGATAGCCCACCACaaaatcag                                                                          >  2:291369/1‑138 (MQ=255)                                                                       cATATCGCCGATGGCAAGCAAAATCTGGTGGTGGCGTCTTCCGATAAATGACCTGGTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGaaa                                                                       <  1:281248/143‑1 (MQ=255)                                                                          atCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGATAATCACGGGCGCGCGAACCGCGCCCGAATCAGACCAGTGATTATGACGAGTCAGTCGGTCAAGATACCCCCTCCCAAATGCAGAAAGca                                                                    >  1:182051/1‑143 (MQ=255)                                                                            cGCCGAGGGCGAGCTGAATCTGTGGCAGGCGTGTTCCGATAAATGACCTGTTAAGAACGGGCGCGCGAACCGCGCCCGAATCAGGTCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGcaca                                                                  <  2:377040/143‑1 (MQ=255)                                                                                 aTGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGt                                                             <  1:532388/143‑1 (MQ=255)                                                                                   ggCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCa                                                           <  2:199666/143‑1 (MQ=255)                                                                                     cGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGa                                                         <  1:344116/143‑1 (MQ=255)                                                                                               cTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACCACAGATGGATAAGGa                                               >  2:85399/1‑143 (MQ=255)                                                                                                 gtgGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACg                                             >  1:418076/1‑143 (MQ=255)                                                                                                    gCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTAc                                          <  2:509337/143‑1 (MQ=255)                                                                                                      gggCGTCTCGCGATAAATGACCTGTGAATGACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGGCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACca                                        <  2:16461/142‑1 (MQ=255)                                                                                                        gCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACcaca                                      >  1:739408/1‑143 (MQ=255)                                                                                                             ttCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGACTCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCACACAGCACAAACGTCAGATGGATAATGACGTACCACACCAGt                                 >  2:395774/1‑143 (MQ=255)                                                                                                                 gATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGCATCAGATCAGTGATTATGACGAGCCATTTGGTCAAGATAGCCCATCACAAATGCAGACAGCACAAACGTCAGATGGATAATGACGTACCACATCCGTTTGt                             >  1:285201/1‑143 (MQ=255)                                                                                                                 gATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGt                             >  1:363557/1‑143 (MQ=255)                                                                                                                      aTGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGGTATcg                        >  2:26947/1‑142 (MQ=255)                                                                                                                         aCCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCggg                     >  2:52350/1‑143 (MQ=255)                                                                                                                          ccTGTTAATAAGGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGa                    <  2:630648/143‑1 (MQ=255)                                                                                                                             gTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGAcct                 >  1:124609/1‑141 (MQ=255)                                                                                                                                        gcgcgcGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACCTTTTTCGCATcc      >  1:695790/1‑143 (MQ=255)                                                                                                                                            gcgAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCCCAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATcactaa  >  2:354390/1‑138 (MQ=255)                                                                                                                                            |                                                                                                                                               ACTAGAGGAGAACGTGCAGGCGCTGAATAATCTGACATTTAGCACCAAGGAGCTGGCGCAGATTGATCAGCATATCGCCGATGGCGAGCTGAATCTGTGGCAGGCGTCTTCCGATAAATGACCTGTTAATAACGGGCGCGCGAACCGCGCCCGAATCAGATCAGTGATTATGACGAGTCAGTCGGTCAAGATAGCCCATCACAAATGCAGAAAGCACAAACGTCAGATGGATAATGACGTACCACATCAGTTTGTTATCCGGGACATTTTTCGCATCCATAA  >  NC_000913/3148817‑3149098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.