New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 35469740 (0.990)3 (0.080) 3/268 5.9 7.4% noncoding (99/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 354713 37 (0.970)noncoding (115/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCC  >  NC_000913/354558‑354838
                                                                                                                                           |                                                                                                                                             
cgtTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAg                                                                                                                                            <  1:70866/143‑1 (MQ=255)
    ggATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTCGGTCGGATAAGgcgc                                                                                                                                        >  1:479573/1‑143 (MQ=255)
     gATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGGAGGTCGGATAAGGCGCt                                                                                                                                       >  1:98861/1‑143 (MQ=255)
       tCAGATCCGCCAGGCGATGGAAGAGTATGTAATTGTCGGGTGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg                                                                                                                                     >  1:462077/1‑143 (MQ=255)
       tCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg                                                                                                                                     <  2:464035/143‑1 (MQ=255)
           aTCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGGCGATGCCTGATGCGACGCTGACGCGTGTTATCATGCCTGCGGACCTGAACCGTAGGTCGGGTGAGGCGCTggcggc                                                                                                                                 >  2:292811/1‑141 (MQ=39)
               gCCAGGCGAGGGAGGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGGACCGTAGGTCGGATAAGGCGCTCGCGTCGCAt                                                                                                                             <  2:444499/143‑1 (MQ=255)
                           aaGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGc                                                                                                                 >  2:467265/1‑143 (MQ=255)
                              agTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGCTTTATCATGCCTACGGACCTGAACCGTAGGTCGGCTAAGGCGGCGGCGTCGCATCCGACACCATGcccc                                                                                                              >  2:645089/1‑140 (MQ=38)
                                taggcatttGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGTCGCGGTGTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGa                                                                                                            <  1:168281/136‑1 (MQ=39)
                                                    cgcgcgGTGCAGCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcg                                                                                        <  1:490490/143‑1 (MQ=255)
                                                            gcgtCCGGCTCTGTGTGCCGATGCCTCATGCGACGCGGACGCGTTTTAGCGTGCCTACCGACCGGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                                <  2:79389/140‑1 (MQ=38)
                                                               tCCGGCACTGTGTGCCGGTGCCTGATGCGCCGCTGACGCGTTGTGGCATGCCTACGGACCTGAACCGTAGGTCGCATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAg                                                                             <  2:479214/143‑1 (MQ=38)
                                                                 cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                           <  1:148618/143‑1 (MQ=255)
                                                                 cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                           <  1:84932/143‑1 (MQ=255)
                                                                 cGGCACTGTGTGCCGAGGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                           <  2:585906/143‑1 (MQ=255)
                                                                    cacggggtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                                                        <  1:550824/137‑1 (MQ=255)
                                                                              cGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATGCGACACCATGCTCAGATGCCTGATGCGACGCTGGCGCGTCTTCTCCCGCCCACCCACTGttt                                                              >  1:365541/1‑143 (MQ=39)
                                                                                    cTGGTGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                        <  1:287986/143‑1 (MQ=255)
                                                                                    cTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACCCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                        <  1:185861/143‑1 (MQ=255)
                                                                                     tGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACAcc                                                       >  1:230067/1‑143 (MQ=255)
                                                                                           gACGCTGACGCGTTTTATCATGCCNACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCNGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCANGCCTACCCACTGTTTTTACACCGACAAt                                                 >  1:48094/1‑143 (MQ=255)
                                                                                            aCGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCCTCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAtt                                                >  1:606220/1‑143 (MQ=255)
                                                                                               cTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAttttt                                             <  1:97767/143‑1 (MQ=255)
                                                                                                    gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCCTGCTCAGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACCCACTGTTTTTACACCCATAATTTTTccccc                                        >  1:37370/1‑143 (MQ=255)
                                                                                                         ttctCATTCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCtt                                   <  1:730267/140‑1 (MQ=255)
                                                                                                             cATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTg                               <  1:391883/143‑1 (MQ=255)
                                                                                                              aTGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGGTTTGACACGGATCATTTTTCCCCCACCCTTTGGc                              >  2:374406/1‑143 (MQ=38)
                                                                                                                gCCTCCGGCCCTGGCCCGTAGGTCGGATCAGGCGCTCGCGTCGCATCCGACACCACGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAc                            <  1:253238/143‑1 (MQ=38)
                                                                                                                 ccTGCGGACCTGAACCGTAGGGCGGATAAGGCGCGCGCGGCGCAGCCGACACCAGGCTCAGATGCCTGATGCGGCGCTGACGCGTCTGATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACt                           <  2:10719/143‑1 (MQ=255)
                                                                                                                 ccTACGGACCTGACGCGTAGGTCGGGTACGGCGCTCGCGTCGCATCCGACACCCTGCTCAGATGTCTGGTGCGACTCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTCCACCTATAATTTTTCCCCCACCTTTTTGCACt                           <  2:538621/143‑1 (MQ=37)
                                                                                                                  cTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtc                          >  1:184642/1‑143 (MQ=255)
                                                                                                                   tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGGACtca                         >  2:416871/1‑143 (MQ=255)
                                                                                                                   tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcc                         >  1:670362/1‑142 (MQ=255)
                                                                                                                    aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCGGACACCAGGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcat                        <  2:674205/143‑1 (MQ=255)
                                                                                                                      ggACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCACACCTTTTTTCACtcattc                      >  1:452362/1‑143 (MQ=255)
                                                                                                                          cTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCatat                  >  1:730410/1‑143 (MQ=255)
                                                                                                                                     gTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATACTTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatatat       >  2:693633/1‑143 (MQ=255)
                                                                                                                                         gATAAGGCGCTCGCGTCGCATCCGTGACCGTGCTTAGGTGGCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTcc   >  2:89732/1‑143 (MQ=39)
                                                                                                                                          aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACGCCTTCCTATAAAAAATATATTTccc  >  1:630927/1‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                             
CGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCC  >  NC_000913/354558‑354838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.