New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 35469740 (0.990)3 (0.080) 3/268 5.9 7.4% noncoding (99/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 354713 37 (0.970)noncoding (115/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAT  >  NC_000913/354573‑354850
                                                                                                                                            |                                                                                                                                         
gCCAGGCGAGGGAGGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGGACCGTAGGTCGGATAAGGCGCTCGCGTCGCAt                                                                                                                                         <  2:444499/143‑1 (MQ=255)
            aaGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGc                                                                                                                             >  2:467265/1‑143 (MQ=255)
               agTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGCTTTATCATGCCTACGGACCTGAACCGTAGGTCGGCTAAGGCGGCGGCGTCGCATCCGACACCATGcccc                                                                                                                          >  2:645089/1‑140 (MQ=38)
                 taggcatttGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGTCGCGGTGTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGa                                                                                                                        <  1:168281/136‑1 (MQ=39)
                                     cgcgcgGTGCAGCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcg                                                                                                    <  1:490490/143‑1 (MQ=255)
                                             gcgtCCGGCTCTGTGTGCCGATGCCTCATGCGACGCGGACGCGTTTTAGCGTGCCTACCGACCGGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                                            <  2:79389/140‑1 (MQ=38)
                                                tCCGGCACTGTGTGCCGGTGCCTGATGCGCCGCTGACGCGTTGTGGCATGCCTACGGACCTGAACCGTAGGTCGCATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAg                                                                                         <  2:479214/143‑1 (MQ=38)
                                                  cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                       <  1:84932/143‑1 (MQ=255)
                                                  cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                       <  1:148618/143‑1 (MQ=255)
                                                  cGGCACTGTGTGCCGAGGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                       <  2:585906/143‑1 (MQ=255)
                                                     cacggggtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                                                                    <  1:550824/137‑1 (MQ=255)
                                                               cGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATGCGACACCATGCTCAGATGCCTGATGCGACGCTGGCGCGTCTTCTCCCGCCCACCCACTGttt                                                                          >  1:365541/1‑143 (MQ=39)
                                                                     cTGGTGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                                    <  1:287986/143‑1 (MQ=255)
                                                                     cTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACCCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                                    <  1:185861/143‑1 (MQ=255)
                                                                      tGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACAcc                                                                   >  1:230067/1‑143 (MQ=255)
                                                                            gACGCTGACGCGTTTTATCATGCCNACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCNGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCANGCCTACCCACTGTTTTTACACCGACAAt                                                             >  1:48094/1‑143 (MQ=255)
                                                                             aCGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCCTCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAtt                                                            >  1:606220/1‑143 (MQ=255)
                                                                                cTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAttttt                                                         <  1:97767/143‑1 (MQ=255)
                                                                                     gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCCTGCTCAGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACCCACTGTTTTTACACCCATAATTTTTccccc                                                    >  1:37370/1‑143 (MQ=255)
                                                                                          ttctCATTCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCtt                                               <  1:730267/140‑1 (MQ=255)
                                                                                              cATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTg                                           <  1:391883/143‑1 (MQ=255)
                                                                                               aTGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGGTTTGACACGGATCATTTTTCCCCCACCCTTTGGc                                          >  2:374406/1‑143 (MQ=38)
                                                                                                 gCCTCCGGCCCTGGCCCGTAGGTCGGATCAGGCGCTCGCGTCGCATCCGACACCACGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAc                                        <  1:253238/143‑1 (MQ=38)
                                                                                                  ccTGCGGACCTGAACCGTAGGGCGGATAAGGCGCGCGCGGCGCAGCCGACACCAGGCTCAGATGCCTGATGCGGCGCTGACGCGTCTGATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACt                                       <  2:10719/143‑1 (MQ=255)
                                                                                                  ccTACGGACCTGACGCGTAGGTCGGGTACGGCGCTCGCGTCGCATCCGACACCCTGCTCAGATGTCTGGTGCGACTCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTCCACCTATAATTTTTCCCCCACCTTTTTGCACt                                       <  2:538621/143‑1 (MQ=37)
                                                                                                   cTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtc                                      >  1:184642/1‑143 (MQ=255)
                                                                                                    tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGGACtca                                     >  2:416871/1‑143 (MQ=255)
                                                                                                    tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcc                                     >  1:670362/1‑142 (MQ=255)
                                                                                                     aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCGGACACCAGGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcat                                    <  2:674205/143‑1 (MQ=255)
                                                                                                       ggACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCACACCTTTTTTCACtcattc                                  >  1:452362/1‑143 (MQ=255)
                                                                                                           cTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCatat                              >  1:730410/1‑143 (MQ=255)
                                                                                                                      gTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATACTTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatatat                   >  2:693633/1‑143 (MQ=255)
                                                                                                                          gATAAGGCGCTCGCGTCGCATCCGTGACCGTGCTTAGGTGGCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTcc               >  2:89732/1‑143 (MQ=39)
                                                                                                                           aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACGCCTTCCTATAAAAAATATATTTccc              >  1:630927/1‑143 (MQ=255)
                                                                                                                               ggCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCCTTCATATAAAAACTATATTTCCCCACg          >  2:497717/1‑143 (MQ=255)
                                                                                                                                gcgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGACTACCCACTGTTTTTCCACCGCTACTTTTTCCCCCACCTTTTTGCCCTCATTCATATAAAAAATATATTTCCCCACgc         >  2:127593/1‑142 (MQ=39)
                                                                                                                                   cTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTCTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGaaaa      <  2:257770/143‑1 (MQ=255)
                                                                                                                                       cgTCGCATCCGACACCATGCTCAGTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAt  <  2:332441/143‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                         
GCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAT  >  NC_000913/354573‑354850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.