New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1237780 =	35 (0.870)	3 (0.080)	3/274	6.0	7.8%	coding (210/1299 nt)	dadA	D‑amino acid dehydrogenase
	?	NC_000913	1237791 =	37 (0.940)					coding (221/1299 nt)	dadA	D‑amino acid dehydrogenase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCATTGATCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGA  >  NC_000913/1237653‑1237920                                                                                                                                |                                                                                                                                             tCATTGATCGGGAGCCGGGGGCCGCCCTGGAAACCAGGGCCGCGAATGCGGGGCAAATCTCCCCCGGAAAAGCTGCACCGTGGGCGGCACCAGGCGTGCCTTTAAAAGCGATCAGATGGACGGTCCAGCGCCACGcgccgcgg                                                                                                                               >  2:18582/1‑141 (MQ=255)    ttGATCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCg                                                                                                                            <  1:48403/143‑1 (MQ=255)      gATCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAGATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGCTTAAATGGATGTTCCAGCGCCATGCGCAGCcggcggc                                                                                                                          >  2:734827/1‑142 (MQ=255)       aTCGGGAGCCGGGGGCGGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCGCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGtt                                                                                                                         <  1:554064/143‑1 (MQ=255)        tCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCGTTTCAAAGCGATTAACTGGATGTTCCAGCGCCATGCGCCGGTGGCGGTTc                                                                                                                        >  2:497889/1‑143 (MQ=255)          gggAGCCGGGGGCCGCCCTGGAAACCAGCGCCGCGAATGCCGGGCAAATCGCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGt                                                                                                                      <  1:142534/143‑1 (MQ=255)            gAGCCGGGGGCCGCCCTGGAAACCAGGGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGtct                                                                                                                    <  2:283112/143‑1 (MQ=255)                cGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGCGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGCTGTTCCAGCGCCATGCGCCGCCGGCGGTTCGTCTCGAc                                                                                                                >  2:575502/1‑143 (MQ=255)                         cccTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACggct                                                                                                       >  1:129269/1‑140 (MQ=255)                         cccTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCGCGACGGGACGCAg                                                                                                       >  1:345243/1‑143 (MQ=255)                          ccTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGt                                                                                                      <  1:633139/143‑1 (MQ=255)                            tGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATCAAATGGAAGTTCCAGCGCAATGCGCGGCGGGCGGTTCGTCTCGACGGGACGCAGTTc                                                                                                    >  2:271632/1‑143 (MQ=255)                             ggAGACGAGTGGGGCGAGGGCGGGGCAAAGGGCCCGCGGGTAGGCTGCACGGTGGGCGGCACCAGGGGTGCCTTTGAAAGGGATTGAGTGGATGTTGCAGCGCCGTGCGCGGCTGGCGGTTCGTCTCGACGGTACGCAGTTcc                                                                                                   <  2:375605/143‑1 (MQ=255)                              gAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCa                                                                                                  <  1:219933/143‑1 (MQ=255)                                aaCCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCCCCAGGTGTGCCGTTACAAGCGATTAAATGGATGTTCCAGCGCCAGGCGCCGCTGGCGGTTCGCCGCGACGGTACGCAGTTCCAGt                                                                                                >  2:462837/1‑143 (MQ=255)                                  ccAGTGCCGCGACTGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTg                                                                                              <  1:117536/143‑1 (MQ=255)                                                  cGGGCAAATCTGCCGCGGGTGTGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCaaa                                                                              <  2:4126/143‑1 (MQ=255)                                                  cGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTACATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGCCGGTACGCAGTTCCCGTTGAAATGGATGTGGCaaa                                                                              >  1:513357/1‑143 (MQ=255)                                                    ggCAAATCTCCACCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATg                                                                            <  1:68986/143‑1 (MQ=255)                                                        actccccccgGGTTGTGCTGCACCGTGGGCGGTGCCAGGTGTGCCTTTCGATGCGATTATGTGCGTGTTTCAGCTCCATGGGCCGCTTGCGGTTCGTCTCCACGGTACTCAGTTCCAGTTTAAATGGATGTGGCAAATGTTAc                                                                        <  2:62703/138‑1 (MQ=255)                                                         aTCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACg                                                                       <  1:535792/143‑1 (MQ=255)                                                            tcCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTCCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAACGGTACGCaa                                                                    >  2:233765/1‑143 (MQ=255)                                                                ccGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGc                                                                >  1:92038/1‑143 (MQ=255)                                                                              ccGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGCTGTGGCAAATGTTACGTAACTGCGACACCAGCCACTa                                                  >  1:131889/1‑143 (MQ=255)                                                                                gggggCGGCACCAGGGGTGGCTTTAAAAGCGATTAAGTGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACa                                                <  2:181180/141‑1 (MQ=255)                                                                                     cggcACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAACGTTACGTAACTGCGACACCAGCCACTACATGGaa                                           <  1:28128/143‑1 (MQ=255)                                                                                         aCCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACa                                       >  1:176716/1‑143 (MQ=255)                                                                                                     tttAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCCGCCACTACATGGAAAACAAAGGGCGGATgg                           >  1:346509/1‑143 (MQ=255)                                                                                                             cGATTAAATGTATGCTCCAGCTCCATGCGCCGCTGGCTGTTCGTCTCGACGTTACGCAGTTCCAGTTGAAATGGATGTGGCTAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTg                   <  1:195269/143‑1 (MQ=255)                                                                                                                ttAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAACGGCGGATGGTGCGTCTGGCg                >  2:563900/1‑143 (MQ=255)                                                                                                                  aaaTGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGa              <  1:525742/143‑1 (MQ=255)                                                                                                                   gacggATGCTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGaa             <  1:678152/140‑1 (MQ=255)                                                                                                                       gATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACa         <  1:183741/143‑1 (MQ=255)                                                                                                                        ctGTTCCAGCGCCACGCGCCGCTGGCGGTTGGCGTCGACGGTACGCAGTGCCGGTTGAAATGGATGTGGCAAATGGCACGTAGCTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAg        <  2:439770/142‑1 (MQ=255)                                                                                                                              cAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACGGCCGTGa  >  1:707530/1‑143 (MQ=255)                                                                                                                                |                                                                                                                                             TCATTGATCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGA  >  NC_000913/1237653‑1237920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.