New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2560168 =	58 (1.440)	4 (0.100)	4/270	5.3	6.7%	intergenic (+102/‑89)	intZ/yffL	CPZ‑55 prophage; putative phage integrase/CPZ‑55 prophage; uncharacterized protein
	?	NC_000913	2560184 =	55 (1.430)					intergenic (+118/‑73)	intZ/yffL	CPZ‑55 prophage; putative phage integrase/CPZ‑55 prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAA  >  NC_000913/2560026‑2560308                                                                                                                                               |                                                                                                                                             cAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATGCAATTTg                                                                                                                                              >  1:180527/1‑143 (MQ=255)            gatAACGGCAAACCTCTAGAACCGGAATGAATAATTAAGCGGCTTCTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTc                                                                                                                                   <  1:184395/141‑1 (MQ=255)             gTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGACACCTGTATTCAATTTGCCGGATTCGTcc                                                                                                                                  >  2:20438/1‑143 (MQ=255)                accgCAATCCTCTACAACCGGAAGGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTACCTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGc                                                                                                                               <  1:114082/140‑1 (MQ=255)                   gCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATATTGCATGTTGTATAAGTATTTGTTTTGTATGGTGTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCAGGATTCGTCCGGctgt                                                                                                                            >  1:43682/1‑141 (MQ=255)                      aTCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGcttttct                                                                                                                         >  1:477906/1‑143 (MQ=255)                       tCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAGGGATGTGTTTTGTGTGGTTTAACTATCACCTGAGAAGAAACCTGTATTCAATCTCCCTGCTTCGTCCGGctcttctt                                                                                                                        >  2:346497/1‑143 (MQ=255)                        ccTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGcttttcttt                                                                                                                       <  1:416428/143‑1 (MQ=255)                        actctAGGACCGGATTGGATAATTGAGCGGCTCTTTTGCACAGCGCGATTTTGCATGTTGTATAAGTATTTTTTTTGTGTGGTTTAACTATCACCTGATAAGATACCTGTATTCAAGTTGCCGGATTCGTCCGGcttttcttt                                                                                                                       <  2:47493/142‑1 (MQ=255)                          tctAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCttttt                                                                                                                     <  1:106687/143‑1 (MQ=255)                           caagcaCCGGAATTAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTc                                                                                                                    <  1:100656/138‑1 (MQ=255)                              gAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCt                                                                                                                 >  1:372113/1‑143 (MQ=255)                                 ccGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAat                                                                                                              >  2:607089/1‑143 (MQ=255)                                    gaatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattat                                                                                                           >  2:643059/1‑143 (MQ=255)                                     aatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattatt                                                                                                          <  1:708250/143‑1 (MQ=255)                                             atTGAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattattccattatt                                                                                                  <  2:365459/143‑1 (MQ=255)                                                  gCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTACttattgctgtattccact                                                                                             >  2:40616/1‑141 (MQ=255)                                                  gCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAAt                                                                                             >  1:330830/1‑143 (MQ=255)                                                     gCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTaa                                                                                          >  1:190827/1‑143 (MQ=255)                                                      cTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAATTATTTGTTTTGTGTGGTTTCAGAACCACCTGATATGGTACCTTTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTTCTATTAAg                                                                                         >  2:714953/1‑143 (MQ=255)                                                      cTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAGGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCGATTATTCCAATTAAg                                                                                         >  1:84646/1‑143 (MQ=255)                                                        tttttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTg                                                                                       <  2:279198/143‑1 (MQ=255)                                                        tttttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTg                                                                                       <  1:563111/143‑1 (MQ=255)                                                         tcttGCAAAGCGCAATGTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTgg                                                                                      <  1:39564/141‑1 (MQ=255)                                                           ttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGaa                                                                                    <  2:108040/143‑1 (MQ=255)                                                            tGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAAt                                                                                   >  2:613558/1‑143 (MQ=255)                                                              cAAAGCGCAATTTTGCAATTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTAGTCCGGCTATTCTTCTTCGCTAATTATTCTATTATTCAACTAAATTGGAATaa                                                                                 >  2:493569/1‑143 (MQ=255)                                                               aaaGCGCAATTTTGCATTGTGTCTTTGTGTTCGTCCTGTGTGGGTTAACTATCACCGGATAAGAACCCTGTCTCCAATTGGCCGGACTCGTCCGGCTTCTCTTTTGCGCTAATTATTCCATTATTCCACTTAATTGGAATaat                                                                                <  2:6868/143‑2 (MQ=255)                                                                   ctctatgttGCATTGTCTTTAAGTATTCGTTTTGTGTGGTTTAACTACCACCTGATAACAAACCTGTATTCAACTTGCCGGATCCGTCCTGCTTTTCTTTTTCGCTAATTATTCCATTATTCCCATTAAGGGGAATAAattat                                                                            <  2:85777/136‑1 (MQ=255)                                                                     cAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTc                                                                          <  1:72806/143‑1 (MQ=255)                                                                     cAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTc                                                                          <  1:483187/143‑1 (MQ=255)                                                                      aaTTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCa                                                                         >  1:156685/1‑143 (MQ=255)                                                                             cATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCaa                                                                  <  2:420315/143‑1 (MQ=255)                                                                              aTTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAg                                                                 <  2:252681/143‑1 (MQ=255)                                                                               ttttGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGa                                                                >  1:445164/1‑143 (MQ=255)                                                                                tttGCATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGATACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGaa                                                               <  2:68772/143‑1 (MQ=255)                                                                                           aTTTGTTTTGTGTGGTTTAACTATCCCCTGCTAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCAt                                                    <  1:690525/143‑1 (MQ=255)                                                                                               gttttgtGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGttt                                                >  1:431609/1‑143 (MQ=255)                                                                                                ttttgtGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTNTTTCGCTAATTATTCCATTATTCCAATTANGTGGAATAAATTANTCAATATCAAGAACTTAAATCCATGTTTg                                               >  1:73465/1‑143 (MQ=255)                                                                                                        ggTTTAACTATCACCTGATAAGAAACATGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGaaa                                       <  1:427439/143‑1 (MQ=255)                                                                                                         gTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGGCCGGCTTTTATTTTTCGCTAATTGTTCCATTATTCCAATTAAGTGGAATAGATGATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAg                                      >  1:68221/1‑143 (MQ=255)                                                                                                          tttAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAATAACTTAAATCCATGTTTGCAACGcaaaa                                     >  2:447289/1‑141 (MQ=255)                                                                                                          tttAACTATCACCTGATAAGAAACCTGTATCCAATTTGCCGGATTCGTCCGGCATTTCTTTTTCGATAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTGAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGa                                     >  2:273375/1‑143 (MQ=255)                                                                                                            tAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATc                                   <  1:295395/143‑1 (MQ=255)                                                                                                                tATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTTGAATAACTTATTCAATCTCAAGAACTTAAATCCATGTTTGCAACGAAATATCCaga                               >  2:584477/1‑143 (MQ=255)                                                                                                                tATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCaga                               >  1:204634/1‑143 (MQ=255)                                                                                                                 aTCACCTCATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCagag                              <  1:395722/143‑1 (MQ=255)                                                                                                                   cACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGtt                            <  1:145182/143‑1 (MQ=255)                                                                                                                        gATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGaaa                       >  1:325958/1‑143 (MQ=255)                                                                                                                            aGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAACTGGACTAACTTATTCAATATCAATAACTTCAATCCATGTTTGCAACCAAACATCCAGAGTTCGAAAATAg                   >  2:115398/1‑143 (MQ=255)                                                                                                                             gAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAgg                  <  2:448818/143‑1 (MQ=255)                                                                                                                                aCCTGTATCCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATc               <  1:92290/143‑1 (MQ=255)                                                                                                                                  cTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGACAATAGGATCaa             >  1:186577/1‑143 (MQ=255)                                                                                                                                  cTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCaa             >  1:191796/1‑143 (MQ=255)                                                                                                                                  cTGGATTCAATTGGCCGGATTAGTCCGGCTTTTCTTTTTCGCTAACTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCaa             <  1:54296/143‑1 (MQ=255)                                                                                                                                     tATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTAGAAAATAGGATCAacac          >  1:195896/1‑143 (MQ=255)                                                                                                                                       ttCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTTCAACGAAAGATCCAGAGTTCGAAAATAGGATCACCACaa        >  1:619821/1‑143 (MQ=255)                                                                                                                                             ttGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTACTCCAGTATTTCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATaaaa  <  2:516334/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                             CAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAA  >  NC_000913/2560026‑2560308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.