New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2560168 =	58 (1.440)	4 (0.100)	4/270	5.3	6.7%	intergenic (+102/‑89)	intZ/yffL	CPZ‑55 prophage; putative phage integrase/CPZ‑55 prophage; uncharacterized protein
	?	NC_000913	2560184 =	55 (1.430)					intergenic (+118/‑73)	intZ/yffL	CPZ‑55 prophage; putative phage integrase/CPZ‑55 prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAA  >  NC_000913/2560044‑2560326                                                                                                                                             |                                                                                                                                               gCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATATTGCATGTTGTATAAGTATTTGTTTTGTATGGTGTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCAGGATTCGTCCGGctgt                                                                                                                                              >  1:43682/1‑141 (MQ=255)    aTCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGcttttct                                                                                                                                           >  1:477906/1‑143 (MQ=255)     tCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAGGGATGTGTTTTGTGTGGTTTAACTATCACCTGAGAAGAAACCTGTATTCAATCTCCCTGCTTCGTCCGGctcttctt                                                                                                                                          >  2:346497/1‑143 (MQ=255)      ccTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGcttttcttt                                                                                                                                         <  1:416428/143‑1 (MQ=255)      actctAGGACCGGATTGGATAATTGAGCGGCTCTTTTGCACAGCGCGATTTTGCATGTTGTATAAGTATTTTTTTTGTGTGGTTTAACTATCACCTGATAAGATACCTGTATTCAAGTTGCCGGATTCGTCCGGcttttcttt                                                                                                                                         <  2:47493/142‑1 (MQ=255)        tctAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCttttt                                                                                                                                       <  1:106687/143‑1 (MQ=255)         caagcaCCGGAATTAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTc                                                                                                                                      <  1:100656/138‑1 (MQ=255)            gAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCt                                                                                                                                   >  1:372113/1‑143 (MQ=255)               ccGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAat                                                                                                                                >  2:607089/1‑143 (MQ=255)                  gaatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattat                                                                                                                             >  2:643059/1‑143 (MQ=255)                   aatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattatt                                                                                                                            <  1:708250/143‑1 (MQ=255)                           atTGAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattattccattatt                                                                                                                    <  2:365459/143‑1 (MQ=255)                                gCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTACttattgctgtattccact                                                                                                               >  2:40616/1‑141 (MQ=255)                                gCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAAt                                                                                                               >  1:330830/1‑143 (MQ=255)                                   gCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTaa                                                                                                            >  1:190827/1‑143 (MQ=255)                                    cTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAATTATTTGTTTTGTGTGGTTTCAGAACCACCTGATATGGTACCTTTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTTCTATTAAg                                                                                                           >  2:714953/1‑143 (MQ=255)                                    cTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAGGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCGATTATTCCAATTAAg                                                                                                           >  1:84646/1‑143 (MQ=255)                                      tttttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTg                                                                                                         <  2:279198/143‑1 (MQ=255)                                      tttttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTg                                                                                                         <  1:563111/143‑1 (MQ=255)                                       tcttGCAAAGCGCAATGTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTgg                                                                                                        <  1:39564/141‑1 (MQ=255)                                         ttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGaa                                                                                                      <  2:108040/143‑1 (MQ=255)                                          tGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAAt                                                                                                     >  2:613558/1‑143 (MQ=255)                                            cAAAGCGCAATTTTGCAATTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTAGTCCGGCTATTCTTCTTCGCTAATTATTCTATTATTCAACTAAATTGGAATaa                                                                                                   >  2:493569/1‑143 (MQ=255)                                             aaaGCGCAATTTTGCATTGTGTCTTTGTGTTCGTCCTGTGTGGGTTAACTATCACCGGATAAGAACCCTGTCTCCAATTGGCCGGACTCGTCCGGCTTCTCTTTTGCGCTAATTATTCCATTATTCCACTTAATTGGAATaat                                                                                                  <  2:6868/143‑2 (MQ=255)                                                 ctctatgttGCATTGTCTTTAAGTATTCGTTTTGTGTGGTTTAACTACCACCTGATAACAAACCTGTATTCAACTTGCCGGATCCGTCCTGCTTTTCTTTTTCGCTAATTATTCCATTATTCCCATTAAGGGGAATAAattat                                                                                              <  2:85777/136‑1 (MQ=255)                                                   cAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTc                                                                                            <  1:483187/143‑1 (MQ=255)                                                   cAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTc                                                                                            <  1:72806/143‑1 (MQ=255)                                                    aaTTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCa                                                                                           >  1:156685/1‑143 (MQ=255)                                                           cATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCaa                                                                                    <  2:420315/143‑1 (MQ=255)                                                            aTTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAg                                                                                   <  2:252681/143‑1 (MQ=255)                                                             ttttGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGa                                                                                  >  1:445164/1‑143 (MQ=255)                                                              tttGCATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGATACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGaa                                                                                 <  2:68772/143‑1 (MQ=255)                                                                         aTTTGTTTTGTGTGGTTTAACTATCCCCTGCTAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCAt                                                                      <  1:690525/143‑1 (MQ=255)                                                                             gttttgtGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGttt                                                                  >  1:431609/1‑143 (MQ=255)                                                                              ttttgtGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTNTTTCGCTAATTATTCCATTATTCCAATTANGTGGAATAAATTANTCAATATCAAGAACTTAAATCCATGTTTg                                                                 >  1:73465/1‑143 (MQ=255)                                                                                      ggTTTAACTATCACCTGATAAGAAACATGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGaaa                                                         <  1:427439/143‑1 (MQ=255)                                                                                       gTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGGCCGGCTTTTATTTTTCGCTAATTGTTCCATTATTCCAATTAAGTGGAATAGATGATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAg                                                        >  1:68221/1‑143 (MQ=255)                                                                                        tttAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAATAACTTAAATCCATGTTTGCAACGcaaaa                                                       >  2:447289/1‑141 (MQ=255)                                                                                        tttAACTATCACCTGATAAGAAACCTGTATCCAATTTGCCGGATTCGTCCGGCATTTCTTTTTCGATAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTGAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGa                                                       >  2:273375/1‑143 (MQ=255)                                                                                          tAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATc                                                     <  1:295395/143‑1 (MQ=255)                                                                                              tATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTTGAATAACTTATTCAATCTCAAGAACTTAAATCCATGTTTGCAACGAAATATCCaga                                                 >  2:584477/1‑143 (MQ=255)                                                                                              tATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCaga                                                 >  1:204634/1‑143 (MQ=255)                                                                                               aTCACCTCATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCagag                                                <  1:395722/143‑1 (MQ=255)                                                                                                 cACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGtt                                              <  1:145182/143‑1 (MQ=255)                                                                                                      gATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGaaa                                         >  1:325958/1‑143 (MQ=255)                                                                                                          aGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAACTGGACTAACTTATTCAATATCAATAACTTCAATCCATGTTTGCAACCAAACATCCAGAGTTCGAAAATAg                                     >  2:115398/1‑143 (MQ=255)                                                                                                           gAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAgg                                    <  2:448818/143‑1 (MQ=255)                                                                                                              aCCTGTATCCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATc                                 <  1:92290/143‑1 (MQ=255)                                                                                                                cTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGACAATAGGATCaa                               >  1:186577/1‑143 (MQ=255)                                                                                                                cTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCaa                               >  1:191796/1‑143 (MQ=255)                                                                                                                cTGGATTCAATTGGCCGGATTAGTCCGGCTTTTCTTTTTCGCTAACTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCaa                               <  1:54296/143‑1 (MQ=255)                                                                                                                   tATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTAGAAAATAGGATCAacac                            >  1:195896/1‑143 (MQ=255)                                                                                                                     ttCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTTCAACGAAAGATCCAGAGTTCGAAAATAGGATCACCACaa                          >  1:619821/1‑143 (MQ=255)                                                                                                                           ttGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTACTCCAGTATTTCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATaaaa                    <  2:516334/143‑1 (MQ=255)                                                                                                                               cGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGccc                >  1:188988/1‑143 (MQ=255)                                                                                                                                       tCCGGCTTTTCTTTTTTGCTAATTATTCCATTATTCCAATTAAGTGGATTAATTTATTCAATATAAAGTACTTAAATCCATGTTTGTAACGAAAGATCTAGAGTTCGGAAATATTTTCAACTCAAATAAAAGCCCACGGATtg        >  2:730249/1‑143 (MQ=255)                                                                                                                                       tCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACTAATAAAAGCCCCCGGAAtg        >  1:194442/1‑143 (MQ=255)                                                                                                                                             ttttcttttTCGCTACTTATTCCATTCTTCCAATTAAGTGGAATAACTTATTCAATATCAAGAACTTAAAGCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATCGGCTCGACACAAACAAAAGCCGCCGGAAtgcgccaa  >  1:110152/1‑138 (MQ=255)                                                                                                                                             |                                                                                                                                               GCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAA  >  NC_000913/2560044‑2560326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.