New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 192538851 (1.270)3 (0.080) 3/260 5.8 6.1% intergenic (+50/‑52) holE/yobB DNA polymerase III, theta subunit/C‑N hydrolase family protein
?NC_000913 = 1925402 46 (1.240)intergenic (+64/‑38) holE/yobB DNA polymerase III, theta subunit/C‑N hydrolase family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTCGCGAGCGGCTTATTGCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAGGGCCGCCGCCAGGCA  >  NC_000913/1925261‑1925543
                                                                                                                                             |                                                                                                                                             
tttCGCGAGCGGCTTATTGCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCa                                                                                                                                              <  2:466807/143‑1 (MQ=255)
       cgCGGCTTATTGCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATaa                                                                                                                                       <  1:492352/142‑1 (MQ=255)
           gCTCATTGCCCACCGTTTGGCTGCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTg                                                                                                                                   <  2:229022/143‑1 (MQ=255)
             ttATTGCCCACCGTTGGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCa                                                                                                                                 <  2:82091/143‑1 (MQ=255)
             gtATTTCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCa                                                                                                                                 <  2:651246/142‑1 (MQ=255)
             gtATTGCCCGCCGTTTGTGTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCa                                                                                                                                 <  2:79678/142‑1 (MQ=255)
                    ccACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGCATTTTCTAAACGTCATTCATAATTGGCAGCCAttt                                                                                                                          >  1:707551/1‑143 (MQ=255)
                       ccGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGa                                                                                                                       <  2:538124/143‑1 (MQ=255)
                          tttGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGaaaa                                                                                                                    >  1:241265/1‑143 (MQ=255)
                          tttGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGaaaa                                                                                                                    <  1:528251/143‑1 (MQ=255)
                              gCTTCTGTCAATCTTTCACTTTTACCTTACGAGTACCAGCTTAGATAGAACTGATACAGAGTTACACTTTATTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGaa                                                                                                                <  2:252104/143‑1 (MQ=255)
                                ttCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGt                                                                                                              >  1:208827/1‑143 (MQ=255)
                                   ggTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGCAGCCAt                                                                                                           >  1:183064/1‑143 (MQ=255)
                                     tCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTa                                                                                                         <  1:109094/143‑1 (MQ=255)
                                     tCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTa                                                                                                         <  1:235084/143‑1 (MQ=255)
                                            gTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAACTCATCAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGtt                                                                                                  <  1:572050/143‑1 (MQ=255)
                                              cACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCt                                                                                                <  1:358435/143‑1 (MQ=255)
                                               aCGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCGTACATAACGCCTGCTAAATTATGAGTAGTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTg                                                                                               <  2:332796/143‑1 (MQ=255)
                                                   ttACCTTACGAGTCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGaaa                                                                                           <  2:453213/143‑1 (MQ=255)
                                                    tACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAg                                                                                          <  2:310556/143‑1 (MQ=255)
                                                                   aaCTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAat                                                                           <  1:661906/143‑1 (MQ=255)
                                                                   aaCTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAat                                                                           <  1:160835/143‑1 (MQ=255)
                                                                       taaataaaACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGa                                                                       <  2:337807/143‑1 (MQ=255)
                                                                         aatcaaACTTAGACAGAGTTACTCTTTCTTACATACCGCCTGCTAAATTATGAGTATGTTCTAAACCGCACTCGTAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGACAGATGAGc                                                                     <  2:487353/143‑1 (MQ=255)
                                                                          ataaaACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTAATAATTTCCAGTCACTTGGAACAGACAGACCGTAGTTCGTTCTGGAAAGTTGCAACCGCGCGATATGAgga                                                                    >  2:11898/1‑141 (MQ=255)
                                                                           taaaACTTATACAGAGTTACACCTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCACTCATTTTGAAAAGGAACTCATTATGTCGCTCTGGAAAGTTGCAGCAGCGCAATATGAGccg                                                                   >  2:641745/1‑142 (MQ=255)
                                                                            aaaaCTGATACAGAGTTACGCTCACTTACAGAACGCCGGATAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTc                                                                  <  1:455114/143‑1 (MQ=255)
                                                                                 ttATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACGGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCGCGTaaa                                                             >  2:662871/1‑143 (MQ=255)
                                                                                 ttATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTaaa                                                             <  1:265041/143‑1 (MQ=255)
                                                                                 ctataCAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTaaa                                                             <  1:151563/142‑1 (MQ=255)
                                                                                   ataCAGGGTTAAACTTTCTTACATAACGGTTGATAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAAc                                                           <  2:276300/143‑1 (MQ=255)
                                                                                   ataCAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAAc                                                           <  2:208827/143‑1 (MQ=255)
                                                                                       cgagTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACctca                                                       <  1:60542/142‑1 (MQ=255)
                                                                                         agTTACACCTCCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAGACCGCACTCATAATTTGCAGTCAGCGTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACctcact                                                     <  1:27667/143‑1 (MQ=255)
                                                                                               acTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGATCCTCGTAAAACCTCACTCACCGa                                               >  1:368865/1‑143 (MQ=255)
                                                                                               acTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCCCCGa                                               >  2:480714/1‑143 (MQ=255)
                                                                                                 tttCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAACACGAAGTCATTATGTCGTCCTGGCAACTTGCATCAGCGCAAAATGATCCCCGTCAAACCTCACTCACCGCAc                                             >  2:251612/1‑143 (MQ=255)
                                                                                                   tCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAg                                           >  1:293820/1‑143 (MQ=255)
                                                                                                                    tAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAACGTTGAAGTAGCGCATTATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGa                          >  1:533985/1‑143 (MQ=255)
                                                                                                                        ttATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGttt                      >  1:434116/1‑143 (MQ=255)
                                                                                                                          aTGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTtgt                    >  1:208348/1‑143 (MQ=255)
                                                                                                                               tATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCCTCCGGAGTTCGTGAggg               >  2:63975/1‑143 (MQ=255)
                                                                                                                               tATTTTCTAAACCGCACGCATAATTGGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAggg               <  1:347969/143‑1 (MQ=255)
                                                                                                                                 ttttCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATCATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAGGgcc             >  1:682872/1‑143 (MQ=255)
                                                                                                                                    gcTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAGGgccgcc          <  2:241265/142‑1 (MQ=255)
                                                                                                                                      tAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGGAGCTCATCATCTGGAGTTGGTGAGGgcggccgc        >  1:520080/1‑143 (MQ=255)
                                                                                                                                          ccGCACTCATAATTTGCAGTCAGTTTGAAAAGGAAGTCATTATGTAGTTCTGGAAAGTTGCGGCAGAGCAATATTAGCCTCGTCAAATCCCACCAACCGAACAGGGAGCGGATCATCTGGAGATTGCTGGGGCCGCCGCCAgg    >  2:494079/1‑143 (MQ=255)
                                                                                                                                            gCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTCTGTGAGGGCCGCCGCCAGGca  >  1:519567/1‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                             
TTTCGCGAGCGGCTTATTGCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAGGGCCGCCGCCAGGCA  >  NC_000913/1925261‑1925543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.