BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	108 [0]	[0] 108	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	102 (1.440)	78/264	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	102 (1.440)	78/264	0.0	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 108 total aligned reads displayed.

CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCT  >  NC_000913/1979139‑1979419

ttctttatacttatctaagatttttcataaatagatgcaactgtactcgtcactacacgcacatataacaaaggggagatgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtat                                                                                                                                            <  2:621579‑M2/3‑1 (MQ=255)

  ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                          >  1:756610‑M2/139‑143 (MQ=255)

   tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattctcaataatccgcgatgcagaccacacaacacactcaattacttaacataaatgTATAAg                                                                                                                                         >  2:597403‑M2/138‑143 (MQ=255)

   ttcacacttatctaagacttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                                                                         <  1:397201‑M2/6‑1 (MQ=255)

    ttacacttatctaagattgttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                        <  1:329567‑M2/7‑1 (MQ=255)

     tacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAgta                                                                                                                                       >  1:847338‑M2/136‑142 (MQ=255)

     tacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                                                                       >  1:369190‑M2/136‑143 (MQ=255)

        acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTGATa                                                                                                                                    >  1:126959‑M2/133‑143 (MQ=255)

         cttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                   <  2:194333‑M2/12‑1 (MQ=255)

         cttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                   <  2:298602‑M2/12‑1 (MQ=255)

          ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt                                                                                                                                  <  1:493323‑M2/13‑1 (MQ=255)

          ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt                                                                                                                                  >  1:403583‑M2/131‑143 (MQ=255)

          ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacacactgacaacggaggggggctgcgatttccaataatgcgtgatgccgatgactcaaaacactcaattacttaacataaatgTATAAGTCATGCt                                                                                                                                  >  1:845352‑M2/131‑143 (MQ=255)

               taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                                                             >  1:430083‑M2/126‑143 (MQ=255)

                aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                            >  2:103612‑M2/125‑143 (MQ=255)

                aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgacgaccacacaaaacactaaactacattacataaatgTATAAGTCAtactatttat                                                                                                                            >  2:883806‑M2/125‑140 (MQ=255)

                 agatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt                                                                                                                           >  2:3636‑M2/124‑143 (MQ=255)

                 agatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggcggcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt                                                                                                                           >  1:1015235‑M2/124‑143 (MQ=255)

                   atttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                                                         <  2:234073‑M2/22‑1 (MQ=255)

                   atttttcctaaatcgacgcaactgtactcgtcactacacgcacacacaacgcaggggggctgcgatattcaataatgcgtgatacagatcacacaaaacactcaattacttaacattaatgTATACATCATACaattgatttg                                                                                                                         >  2:1082984‑M2/122‑143 (MQ=255)

                    tttttgctaaatcgacgcaactgtactcgtcaatacacgcacatacaacggaggggggctgagcgtttcagtaatgcgtgatgcagatcacataaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                        <  2:474702‑M2/23‑1 (MQ=255)

                    tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaccactcaattacttaacataaatgTATAAGTCATACTtttggtttgg                                                                                                                        <  2:1124712‑M2/23‑1 (MQ=255)

                    tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                        <  2:1112046‑M2/23‑1 (MQ=255)

                       ttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaaaaatcaattacctaacataaatgTATAAGTCATACTTTTGCTTTCGgtg                                                                                                                     >  2:955020‑M2/118‑143 (MQ=255)

                          ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                                                                                                                  >  1:158913‑M2/115‑143 (MQ=255)

                           taaatcgacgcaactgtactcgtaacaacacgcacatacaacggaggggggctgcgactttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                 >  1:576313‑M2/114‑143 (MQ=255)

                               tcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                                                             <  2:498938‑M2/34‑1 (MQ=255)

                                cgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                            <  2:157555‑M2/35‑1 (MQ=255)

                                cgacgacacggtcctcgtcactacacgaaaatagcagtggggggggctgcaatttccaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTcaac                                                                                                            <  2:831407‑M2/35‑2 (MQ=255)

                                  acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                          <  1:938999‑M2/37‑1 (MQ=255)

                                   ctcaaccgtactcgtcactacacgcacatacaacggaggggggttccgattttcaataatgcgtgatgcatatcacacaaaacactccattacttaacataaatgTATAACTCATACTTTTGTTTTGGGTGTATTTCAATCTg                                                                                                         <  1:939960‑M2/38‑1 (MQ=255)

                                     cgactgcactcggcactacacgcacatccaacggcgggggaccacaatcttcaataatgcgtgatgcagatcacacaaaacactcaattacgtaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                       <  2:954066‑M2/40‑1 (MQ=255)

                                     caactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                       <  2:703227‑M2/40‑1 (MQ=255)

                                     caactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                       <  2:1164846‑M2/40‑1 (MQ=255)

                                      aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                                                                      >  2:621092‑M2/103‑143 (MQ=255)

                                         tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                                                                   >  1:87499‑M2/100‑143 (MQ=255)

                                           tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                                 >  2:1010947‑M2/98‑143 (MQ=255)

                                             ctcgtcactacacgcgcatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcgattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                                                                                               <  2:578486‑M2/48‑1 (MQ=255)

                                              tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCACTCCGTTAAACAGttt                                                                                              >  1:28922‑M2/95‑143 (MQ=255)

                                              tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                              >  1:1021891‑M2/95‑143 (MQ=255)

                                              tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                              <  1:408428‑M2/49‑1 (MQ=255)

                                                gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcgattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                            >  2:539766‑M2/93‑143 (MQ=255)

                                                gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                            >  1:372446‑M2/93‑143 (MQ=255)

                                                gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                            <  2:369190‑M2/51‑1 (MQ=255)

                                                  cacgacacgcacatactacgcagggcggctgcgattttcaataatgcgtgatgcagatcacataaaacacttaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                          <  2:377070‑M2/53‑1 (MQ=255)

                                                    ctacacgcacatacaacggaggggggctgcgattttcaatactgcaagatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATGTCAATCTGTTAAAAAGTTTttcggt                                                                                        >  2:739445‑M2/89‑141 (MQ=255)

                                                     tcaacgaacatacaatggaggggggctgagattttcaataatgcgtgatacagaacacacaaaacactcaattacgaaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                       <  2:907775‑M2/56‑1 (MQ=255)

                                                          gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgtta                                                                                  >  2:632028‑M2/83‑143 (MQ=255)

                                                          gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                  >  2:67826‑M2/83‑143 (MQ=255)

                                                              atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacctaaatgTATACGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                              >  1:85730‑M2/79‑143 (MQ=255)

                                                              atacaacggaggggggctgcgattttcaataatgcgagatgcagatcacacaaaacactcaattacttaacataaacgCACAAGCCATACTCTTGCCTTAGGTGTATTTCAATCTGATAAAAAGTTTTTCGCTACCCTagcaa                                                                              >  2:1179990‑M2/79‑143 (MQ=255)

                                                               tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTTGCTACGCTagcaag                                                                             >  2:1040030‑M2/78‑143 (MQ=255)

                                                                  aacggaggggggctgcgattttcactaatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                                                          >  2:746391‑M2/75‑143 (MQ=255)

                                                                  aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                                                          <  1:171584‑M2/69‑1 (MQ=255)

                                                                    cggaggggggctgcgattttcaataatccgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTAAATCTATTAAAAAGCTTTTCGCTACGCtatcacgcaata                                                                        >  2:942326‑M2/73‑141 (MQ=255)

                                                                    ccgaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacttaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                        <  2:751214‑M2/71‑1 (MQ=255)

                                                                      gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                      >  1:474485‑M2/71‑143 (MQ=255)

                                                                       cgggggtctgcgattttcaataatgcgtgatgcagatcacacaaaactctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                                     <  1:1296694‑M2/74‑1 (MQ=255)

                                                                       aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGATTTGGGTGTATTTCAATCTGTTAAAAAGTAAATAGCCACCCTTTCAACCAAAAATg                                                                     >  1:909350‑M2/70‑143 (MQ=255)

                                                                         gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                                                                   <  2:183174‑M2/76‑1 (MQ=255)

                                                                         gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                                                                   <  1:103612‑M2/76‑1 (MQ=255)

                                                                             gctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                               <  1:359326‑M2/80‑1 (MQ=255)

                                                                              ctgcgacttgcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                                                              <  1:976934‑M2/81‑1 (MQ=255)

                                                                                  gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                                                          >  1:581946‑M2/59‑143 (MQ=255)

                                                                                        caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTCTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAACTGAAACAGGCATAATCGaa                                                    >  2:894915‑M2/53‑143 (MQ=255)

                                                                                         aataatgcgtgatgcagatcacaaaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                                   >  2:166066‑M2/52‑143 (MQ=255)

                                                                                          ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                  >  1:355292‑M2/51‑143 (MQ=255)

                                                                                           taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                                 >  1:332189‑M2/50‑143 (MQ=255)

                                                                                            aatgcgtgatgcagatcagacaaaacattcaagtacttaacgtaaatgTATAAGGCATACTTTTGTTTTGCGTGTATTTAAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                                <  2:867836‑M2/95‑1 (MQ=255)

                                                                                             atgtgtgatgcagatcacacaaaacactcaattactcaccataaatgTATAATTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGCAATAATCGACATggg                                               >  1:1285716‑M2/48‑143 (MQ=255)

                                                                                             atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                               >  2:793045‑M2/48‑143 (MQ=255)

                                                                                                cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg                                            <  2:87499‑M2/99‑1 (MQ=255)

                                                                                                  tgatgcagttcacacaaaacactcaattacttaacataaacgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt                                          <  2:1042756‑M2/101‑1 (MQ=255)

                                                                                                        agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTATTGGCTACGCTAACAAGAAAAAATGAAACAGAAATGATGGAAATGGAATgttgcgaaa                                    >  2:337872‑M2/37‑140 (MQ=255)

                                                                                                         gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                   <  1:3636‑M2/108‑1 (MQ=255)

                                                                                                          atcacacaaaacactcaattacttaacataaatgTATACGTCATCCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATACCAATCAAAAAAGAAACAGTAAGACTCACACTAGGATGTTGCTCACAg                                  >  2:881424‑M2/35‑143 (MQ=255)

                                                                                                           tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAACTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                 >  1:67273‑M2/34‑143 (MQ=255)

                                                                                                               acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                             >  1:1177539‑M2/30‑127 (MQ=255)

                                                                                                               acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                             <  2:1177539‑M2/98‑1 (MQ=255)

                                                                                                               acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                             >  2:79761‑M2/30‑143 (MQ=255)

                                                                                                               acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                             >  1:936768‑M2/30‑143 (MQ=255)

                                                                                                                 aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                           >  1:737175‑M2/28‑143 (MQ=255)

                                                                                                                   aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTGTCGCAGTTCTCGCTACGACCGCATGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                         <  1:991591‑M2/118‑1 (MQ=255)

                                                                                                                   aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTACAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                         >  2:369165‑M2/26‑143 (MQ=255)

                                                                                                                   aacactcaattacttaacataaatgTATAAGTCATACTTTTGGTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                         <  1:613458‑M2/118‑1 (MQ=255)

                                                                                                                   aacactcaatcactcaacacaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                         <  1:708270‑M2/118‑1 (MQ=255)

                                                                                                                     cactcaatttcttagcagaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt                       <  1:837331‑M2/120‑1 (MQ=255)

                                                                                                                      actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCCCACAGTCAAAATAACTc                      >  2:1204933‑M2/23‑143 (MQ=255)

                                                                                                                       ctcaagtacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                     <  1:1256056‑M2/122‑1 (MQ=255)

                                                                                                                        tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGGATAAGGGATAATCGAAATGGGATGTTGCGCACAGTCACAATAACTcat                    >  1:1041693‑M2/21‑142 (MQ=255)

                                                                                                                        tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAGATGGGATGTTGCGCGCAGTCAAAATAAGTCAc                    >  1:334446‑M2/21‑143 (MQ=255)

                                                                                                                        tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACTTTCAAAAtcactcac                    >  1:38481‑M2/21‑143 (MQ=255)

                                                                                                                             tacttaacataaatgTATAAGTCATACTTTTGTTGTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa               <  1:477658‑M2/128‑1 (MQ=255)

                                                                                                                               cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAACATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat             >  1:283495‑M2/14‑143 (MQ=255)

                                                                                                                                   acataaatgTATAAGTCAAACTGTTCTTTCGGGAGAATTTCAAACTGTAAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc         <  2:428471‑M2/134‑1 (MQ=255)

                                                                                                                                     ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat       >  1:1316092‑M2/8‑143 (MQ=255)

                                                                                                                                     ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGAGATGTTGCGCACAGTCAAAATAACTCACCGTAAAGAatcat       >  2:1231329‑M2/8‑143 (MQ=255)

                                                                                                                                      taaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAACAATCGAAATGGGATGTTGCGCGCAGTCCAAATAACTCACCGTAACTAatcatc      >  1:516730‑M2/7‑143 (MQ=255)

                                                                                                                                       aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt     >  1:1307331‑M2/6‑143 (MQ=255)

                                                                                                                                          tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCt  <  1:539766‑M2/141‑1 (MQ=255)

CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCT  >  NC_000913/1979139‑1979419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`