| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4153628 | 46 (0.760) | 4 (0.080) +CTACAGTGACTCAAACGATGCCCAAC |
4/230 | 7.3 | 9.6% | noncoding (282/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 4153693 | NA (NA) | intergenic (‑595/+3) | ppc/argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATA > NC_000913/4153486‑4153770 | gcgcAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATGGCATCCGAc > 1:924737/1‑143 (MQ=37) cgcAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGCTAAGATGCGCGAGCGTCGCATCCGGCa > 1:124314/1‑143 (MQ=255) aTCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTTGGTACCGTCAGAGACACTGTAGGTCGGATAAGATGCGCTCGCAGCGGATCCGCCAGAACTGCggagc > 2:669051/1‑140 (MQ=11) tCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGATCAGCTTGGAGTCTCAAGCATCGCATCCGACATTATTGCGGCACt < 1:749809/143‑1 (MQ=11) attattGCGGAGCTGGAGTTTGGCAACAGTGAGGGAGGCGGCACGAGCGGGTTATGGGGCCTACGGTTGGGAATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGtt < 1:456163/143‑1 (MQ=14) gtattGCGGCACCGGAGATTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGttt < 1:529243/142‑1 (MQ=255) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCCCTGGAGTTTGGCa > 1:1008785/1‑143 (MQ=38) tttGGCAACAGTGCCTGATGCGGCGCGTGCGCCTTTTCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATg < 2:46987/143‑1 (MQ=255) tGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGACGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCCACAGCGCCGGATgcg > 1:476182/1‑143 (MQ=255) gCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTTCGGCACTAGAGTTAGGCAACAGCGCCGGATggggc > 1:370633/1‑143 (MQ=255) gCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTCGGCATCGGTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTCTTGCGGACGTGGAGGTTGGCAAAAGCGGCGGATgcggc > 1:424208/1‑143 (MQ=14) gcggcgCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGCTGCGCAAGCATCGCATCCGACATGACTGCGGCACTGGAGTTTGGCGACCGCGGCGGCAGCGGCCCGAGCGccgagccg > 2:590835/1‑137 (MQ=14) ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑GCGTTTTaa > 1:774017/1‑143 (MQ=255) ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTaa > 1:1075328/1‑143 (MQ=255) cGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCC‑ACGGTTTAATGccc > 1:391541/1‑142 (MQ=255) ggCCTACGGTTGGGCATCGTTTGAGTCACTGTCGGTCGTATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAg < 1:846841/143‑1 (MQ=255) aCGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑CCGTTTTGATGCCAGCaaga > 2:87410/1‑141 (MQ=255) ggTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGAGACGGCGCGAGCGACCTATCCGGACT‑AACTTTTAATGCCAGCAAAAAt > 2:1065457/1‑143 (MQ=17) gcggCACCGTTACAGTCACTGTCGGGCCGATGCGATGCGCAAGGAGCGCAGCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGt < 2:529976/141‑1 (MQ=17) gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCCGCAGCAATGGTGaa > 1:259661/1‑143 (MQ=255) gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAACAATGGTGaa > 2:1016104/1‑143 (MQ=255) tCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATggggcaatg > 2:264341/1‑136 (MQ=255) gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTAcc < 1:264341/143‑1 (MQ=255) gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACATTTTAATGCAAGCAAAAATGATGAATTaac > 1:683772/1‑141 (MQ=255) tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTCATCCGGCCT‑ACGTTTCAATCCCAGCAAACCTGGCGAACTAccc > 2:569609/1‑142 (MQ=17) tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAGAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAGAAATGGTGAAGTAcat > 1:152186/1‑141 (MQ=255) gTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGtt > 1:162263/1‑143 (MQ=255) cTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACattatt < 1:262255/44‑1 (MQ=255) gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc > 2:506844/1‑143 (MQ=255) gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc > 1:436436/1‑143 (MQ=255) gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGAGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTAcgc > 2:182700/1‑143 (MQ=255) tCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgcg > 1:780225/1‑143 (MQ=255) gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTCATCAGCTCGCGGGt > 1:6102/1‑143 (MQ=255) gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGCGAATTACCTGGGTTATCAGGTCGCGGGt > 2:339198/1‑143 (MQ=255) aaGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTAT‑TGACTTAACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTggg > 1:249329/1‑143 (MQ=21) gATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCt > 2:353630/1‑143 (MQ=255) tcgtaGCATCGCAGCCGACAGTATTGCGGCACCGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGAt < 1:1073394/139‑1 (MQ=255) gcAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGcc < 1:121168/51‑1 (MQ=255) agtatcgcatcCGACATTATTGCGGCACTGGAGTGTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc < 2:413994/140‑1 (MQ=255) aGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc < 1:964895/143‑1 (MQ=255) atcgcatcCGACGTTAGTGCGGCACTGGAGTTTGGCAACAGCGCACGATGCTGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt < 2:432736/143‑1 (MQ=37) agcgcatcCGACGTTAGGGCGGCACTGGAGGTTGGCAACAGCGCCGGACGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt < 2:433289/141‑1 (MQ=37) tcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgtg < 1:506844/143‑1 (MQ=255) cGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTAAATCGGTTATCTTGTCGCTGGTGGGCTTGATAAACCGTGTTTCCAg < 1:749688/143‑1 (MQ=25) cGACATGATTGCGGCACGGCAGTTTGGCAACAGCGTCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTAAATGACAGAAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAg < 2:87600/143‑1 (MQ=37) gACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGa > 1:980131/1‑143 (MQ=255) cATTAGAGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGata < 2:299226/143‑1 (MQ=255) | GCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATA > NC_000913/4153486‑4153770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |