New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 415362846 (0.760)4 (0.080)
+CTACAGTGACTCAAACGATGCCCAAC
4/230 7.3 9.6% noncoding (282/346 nt) REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 4153693 NA (NA)intergenic (‑595/+3) ppc/argE phosphoenolpyruvate carboxylase/acetylornithine deacetylase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTT  >  NC_000913/4153557‑4153835
                                                                                                                                         |                                                                                                                                              
ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTGCGTTTTaa                                                                                                                                          >  1:774017/1‑143 (MQ=255)
ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTaa                                                                                                                                          >  1:1075328/1‑143 (MQ=255)
     cGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCCACGGTTTAATGccc                                                                                                                                     >  1:391541/1‑142 (MQ=255)
      ggCCTACGGTTGGGCATCGTTTGAGTCACTGTCGGTCGTATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAg                                                                                                                                    <  1:846841/143‑1 (MQ=255)
           aCGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTCCGTTTTGATGCCAGCaaga                                                                                                                               >  2:87410/1‑141 (MQ=255)
             ggTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGAGACGGCGCGAGCGACCTATCCGGACTAACTTTTAATGCCAGCAAAAAt                                                                                                                             >  2:1065457/1‑143 (MQ=17)
                gcggCACCGTTACAGTCACTGTCGGGCCGATGCGATGCGCAAGGAGCGCAGCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGt                                                                                                                          <  2:529976/141‑1 (MQ=17)
                   gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCCGCAGCAATGGTGaa                                                                                                                       >  1:259661/1‑143 (MQ=255)
                   gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAACAATGGTGaa                                                                                                                       >  2:1016104/1‑143 (MQ=255)
                      tCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATggggcaatg                                                                                                                    >  2:264341/1‑136 (MQ=255)
                        gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTAcc                                                                                                                  <  1:264341/143‑1 (MQ=255)
                        gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACATTTTAATGCAAGCAAAAATGATGAATTaac                                                                                                                  >  1:683772/1‑141 (MQ=255)
                         tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTCATCCGGCCTACGTTTCAATCCCAGCAAACCTGGCGAACTAccc                                                                                                                 >  2:569609/1‑142 (MQ=17)
                         tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAGAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAGAAATGGTGAAGTAcat                                                                                                                 >  1:152186/1‑141 (MQ=255)
                              gTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGtt                                                                                                            >  1:162263/1‑143 (MQ=255)
                                        gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc                                                                                                  >  2:506844/1‑143 (MQ=255)
                                        gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc                                                                                                  >  1:436436/1‑143 (MQ=255)
                                        gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGAGCGAGCGCCTTATCCGGCCTACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTAcgc                                                                                                  >  2:182700/1‑143 (MQ=255)
                                         tCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgcg                                                                                                 >  1:780225/1‑143 (MQ=255)
                                            gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTCATCAGCTCGCGGGt                                                                                              >  1:6102/1‑143 (MQ=255)
                                            gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGCGAATTACCTGGGTTATCAGGTCGCGGGt                                                                                              >  2:339198/1‑143 (MQ=255)
                                               aaGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATTGACTTAACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTggg                                                                                           >  1:249329/1‑143 (MQ=21)
                                                 gATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCt                                                                                         >  2:353630/1‑143 (MQ=255)
                                                     tcgtaGCATCGCAGCCGACAGTATTGCGGCACCGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGAt                                                                                     <  1:1073394/139‑1 (MQ=255)
                                                         agtatcgcatcCGACATTATTGCGGCACTGGAGTGTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc                                                                                 <  2:413994/140‑1 (MQ=255)
                                                         aGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc                                                                                 <  1:964895/143‑1 (MQ=255)
                                                            atcgcatcCGACGTTAGTGCGGCACTGGAGTTTGGCAACAGCGCACGATGCTGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt                                                                              <  2:432736/143‑1 (MQ=37)
                                                            agcgcatcCGACGTTAGGGCGGCACTGGAGGTTGGCAACAGCGCCGGACGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt                                                                              <  2:433289/141‑1 (MQ=37)
                                                             tcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgtg                                                                             <  1:506844/143‑1 (MQ=255)
                                                                    cGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTAAATCGGTTATCTTGTCGCTGGTGGGCTTGATAAACCGTGTTTCCAg                                                                      <  1:749688/143‑1 (MQ=25)
                                                                    cGACATGATTGCGGCACGGCAGTTTGGCAACAGCGTCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTAAATGACAGAAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAg                                                                      <  2:87600/143‑1 (MQ=37)
                                                                     gACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGa                                                                     >  1:980131/1‑143 (MQ=255)
                                                                       cATTAGAGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGata                                                                   <  2:299226/143‑1 (MQ=255)
                                                                          tagtGCGGCACTGGAGTTTGGCATCAGCGGCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtc                                                                <  2:181197/140‑1 (MQ=255)
                                                                                   aCTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCCTCAGGTtg                                                       >  2:913251/1‑143 (MQ=255)
                                                                                    cTGGAGGTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCGAAAATGGTGAATTACCTTGGTTATCAGTTCGCGGGTGGGCTTGATAAACGGCGGTTCCACCGATTAATCAGGCtga                                                      >  2:676073/1‑143 (MQ=25)
                                                                                     tGGAGTTTGGCAAGAGCGCCGGATGGGGCGCGAGCGCTTTATCCGGCCTACGTTTTAATGTCAGCAAAAACTGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTtgat                                                     <  2:885923/143‑1 (MQ=255)
                                                                                        aGTTTGGCAACAGCGCCGGATGCGGCGCGAGAGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATATACCGTGTTTCCAGATATTCTTCAGGTTGATGAg                                                  >  1:27160/1‑143 (MQ=255)
                                                                                         gTTTGGCAACAGCGCCGGAGGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGc                                                 <  1:346014/143‑1 (MQ=255)
                                                                                          tttGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGCTGATGAGca                                                >  2:315101/1‑142 (MQ=255)
                                                                                             ggCAACAGCGCCGGAAGCGACGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGa                                             <  1:496978/143‑1 (MQ=255)
                                                                                              gCAAGAGCGCCGGATGCGGCGCGAGCGCCGTATCCGGCCTACGTTTGAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGAt                                            <  1:437625/143‑1 (MQ=255)
                                                                                               cAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGCtt                                           >  1:436206/1‑143 (MQ=255)
                                                                                                 aCAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGAttca                                         >  1:380463/1‑141 (MQ=255)
                                                                                                    gcgcCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTg                                      <  1:353630/143‑1 (MQ=255)
                                                                                                     cgcCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCGAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCCGATATTCATCAGGTTGATGAGCCTGGTTAATTGa                                     >  2:752481/1‑143 (MQ=255)
                                                                                                             gcggtgCGAGCGCCTTATCCGGCCTAGGTTTTATTGCCAGCAAAAATGGTGAATGTCCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGcc                             <  2:72185/143‑1 (MQ=255)
                                                                                                               ggcgCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGCTAAACCGTGTTCCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGcccc                           >  1:288285/1‑143 (MQ=255)
                                                                                                                 cgcgAGCGCGTTATCGGGGCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCaa                         <  2:963849/143‑1 (MQ=255)
                                                                                                                            tATCCGGCCTACGTTTTAAGGCCAGCAAAACTGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCg              <  2:54809/143‑1 (MQ=255)
                                                                                                                             aTCCGGGCTGCGTTTTAATGCCAGCAAAAGTGGTGGATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCgg             <  1:854553/143‑1 (MQ=255)
                                                                                                                               ccGGCCTACTTTTTAATGCCAGCAAAAATGGTGCATTACCTGCGTTACCAGTTCGCGGGTGGGCTTGATAACCCGTGTTTCCAGCTATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGc           <  1:149821/143‑1 (MQ=255)
                                                                                                                                       aCGTTTTAATGCCAGCGAAAATGGTGAATTACCTGGGGTATCAGTTCGCGGGGGGGCTGGATAAACCGTGTTTCCAGATATTAATCAGGTGGATGAGCCTCATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCGTAGCGt    >  2:753096/1‑143 (MQ=255)
                                                                                                                                       aCGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGt    >  2:814767/1‑143 (MQ=255)
                                                                                                                                         gTTTTAAGGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGttt  <  2:185722/143‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                              
TTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTT  >  NC_000913/4153557‑4153835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.