New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4153628	46 (0.760)	4 (0.080) +CTACAGTGACTCAAACGATGCCCAAC	4/230	7.3	9.6%	noncoding (282/346 nt)	REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913	= 4153693	NA (NA)					intergenic (‑595/+3)	ppc/argE	phosphoenolpyruvate carboxylase/acetylornithine deacetylase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTT  >  NC_000913/4153557‑4153835                                                                                                                                          |                                                                                                                                               ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑GCGTTTTaa                                                                                                                                          >  1:774017/1‑143 (MQ=255) ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTaa                                                                                                                                          >  1:1075328/1‑143 (MQ=255)      cGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCC‑ACGGTTTAATGccc                                                                                                                                     >  1:391541/1‑142 (MQ=255)       ggCCTACGGTTGGGCATCGTTTGAGTCACTGTCGGTCGTATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAg                                                                                                                                    <  1:846841/143‑1 (MQ=255)            aCGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑CCGTTTTGATGCCAGCaaga                                                                                                                               >  2:87410/1‑141 (MQ=255)              ggTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGAGACGGCGCGAGCGACCTATCCGGACT‑AACTTTTAATGCCAGCAAAAAt                                                                                                                             >  2:1065457/1‑143 (MQ=17)                 gcggCACCGTTACAGTCACTGTCGGGCCGATGCGATGCGCAAGGAGCGCAGCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGt                                                                                                                          <  2:529976/141‑1 (MQ=17)                    gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCCGCAGCAATGGTGaa                                                                                                                       >  1:259661/1‑143 (MQ=255)                    gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAACAATGGTGaa                                                                                                                       >  2:1016104/1‑143 (MQ=255)                       tCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATggggcaatg                                                                                                                    >  2:264341/1‑136 (MQ=255)                         gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTAcc                                                                                                                  <  1:264341/143‑1 (MQ=255)                         gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACATTTTAATGCAAGCAAAAATGATGAATTaac                                                                                                                  >  1:683772/1‑141 (MQ=255)                          tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTCATCCGGCCT‑ACGTTTCAATCCCAGCAAACCTGGCGAACTAccc                                                                                                                 >  2:569609/1‑142 (MQ=17)                          tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAGAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAGAAATGGTGAAGTAcat                                                                                                                 >  1:152186/1‑141 (MQ=255)                               gTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGtt                                                                                                            >  1:162263/1‑143 (MQ=255)                                         gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc                                                                                                  >  2:506844/1‑143 (MQ=255)                                         gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc                                                                                                  >  1:436436/1‑143 (MQ=255)                                         gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGAGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTAcgc                                                                                                  >  2:182700/1‑143 (MQ=255)                                          tCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgcg                                                                                                 >  1:780225/1‑143 (MQ=255)                                             gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTCATCAGCTCGCGGGt                                                                                              >  1:6102/1‑143 (MQ=255)                                             gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGCGAATTACCTGGGTTATCAGGTCGCGGGt                                                                                              >  2:339198/1‑143 (MQ=255)                                                aaGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTAT‑TGACTTAACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTggg                                                                                           >  1:249329/1‑143 (MQ=21)                                                  gATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCt                                                                                         >  2:353630/1‑143 (MQ=255)                                                      tcgtaGCATCGCAGCCGACAGTATTGCGGCACCGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGAt                                                                                     <  1:1073394/139‑1 (MQ=255)                                                          agtatcgcatcCGACATTATTGCGGCACTGGAGTGTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc                                                                                 <  2:413994/140‑1 (MQ=255)                                                          aGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc                                                                                 <  1:964895/143‑1 (MQ=255)                                                             atcgcatcCGACGTTAGTGCGGCACTGGAGTTTGGCAACAGCGCACGATGCTGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt                                                                              <  2:432736/143‑1 (MQ=37)                                                             agcgcatcCGACGTTAGGGCGGCACTGGAGGTTGGCAACAGCGCCGGACGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt                                                                              <  2:433289/141‑1 (MQ=37)                                                              tcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgtg                                                                             <  1:506844/143‑1 (MQ=255)                                                                     cGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTAAATCGGTTATCTTGTCGCTGGTGGGCTTGATAAACCGTGTTTCCAg                                                                      <  1:749688/143‑1 (MQ=25)                                                                     cGACATGATTGCGGCACGGCAGTTTGGCAACAGCGTCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTAAATGACAGAAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAg                                                                      <  2:87600/143‑1 (MQ=37)                                                                      gACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGa                                                                     >  1:980131/1‑143 (MQ=255)                                                                        cATTAGAGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGata                                                                   <  2:299226/143‑1 (MQ=255)                                                                           tagtGCGGCACTGGAGTTTGGCATCAGCGGCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtc                                                                <  2:181197/140‑1 (MQ=255)                                                                                    aCTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCCTCAGGTtg                                                       >  2:913251/1‑143 (MQ=255)                                                                                     cTGGAGGTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCGAAAATGGTGAATTACCTTGGTTATCAGTTCGCGGGTGGGCTTGATAAACGGCGGTTCCACCGATTAATCAGGCtga                                                      >  2:676073/1‑143 (MQ=25)                                                                                      tGGAGTTTGGCAAGAGCGCCGGATGGGGCGCGAGCGCTTTATCCGGCCT‑ACGTTTTAATGTCAGCAAAAACTGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTtgat                                                     <  2:885923/143‑1 (MQ=255)                                                                                         aGTTTGGCAACAGCGCCGGATGCGGCGCGAGAGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATATACCGTGTTTCCAGATATTCTTCAGGTTGATGAg                                                  >  1:27160/1‑143 (MQ=255)                                                                                          gTTTGGCAACAGCGCCGGAGGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGc                                                 <  1:346014/143‑1 (MQ=255)                                                                                           tttGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGCTGATGAGca                                                >  2:315101/1‑142 (MQ=255)                                                                                              ggCAACAGCGCCGGAAGCGACGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGa                                             <  1:496978/143‑1 (MQ=255)                                                                                               gCAAGAGCGCCGGATGCGGCGCGAGCGCCGTATCCGGCCT‑ACGTTTGAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGAt                                            <  1:437625/143‑1 (MQ=255)                                                                                                cAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGCtt                                           >  1:436206/1‑143 (MQ=255)                                                                                                  aCAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGAttca                                         >  1:380463/1‑141 (MQ=255)                                                                                                     gcgcCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTg                                      <  1:353630/143‑1 (MQ=255)                                                                                                      cgcCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCGAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCCGATATTCATCAGGTTGATGAGCCTGGTTAATTGa                                     >  2:752481/1‑143 (MQ=255)                                                                                                              gcggtgCGAGCGCCTTATCCGGCCT‑AGGTTTTATTGCCAGCAAAAATGGTGAATGTCCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGcc                             <  2:72185/143‑1 (MQ=255)                                                                                                                ggcgCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGCTAAACCGTGTTCCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGcccc                           >  1:288285/1‑143 (MQ=255)                                                                                                                  cgcgAGCGCGTTATCGGGGCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCaa                         <  2:963849/143‑1 (MQ=255)                                                                                                                             tATCCGGCCT‑ACGTTTTAAGGCCAGCAAAACTGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCg              <  2:54809/143‑1 (MQ=255)                                                                                                                              aTCCGGGCT‑GCGTTTTAATGCCAGCAAAAGTGGTGGATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCgg             <  1:854553/143‑1 (MQ=255)                                                                                                                                ccGGCCT‑ACTTTTTAATGCCAGCAAAAATGGTGCATTACCTGCGTTACCAGTTCGCGGGTGGGCTTGATAACCCGTGTTTCCAGCTATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGc           <  1:149821/143‑1 (MQ=255)                                                                                                                                        aCGTTTTAATGCCAGCGAAAATGGTGAATTACCTGGGGTATCAGTTCGCGGGGGGGCTGGATAAACCGTGTTTCCAGATATTAATCAGGTGGATGAGCCTCATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCGTAGCGt    >  2:753096/1‑143 (MQ=255)                                                                                                                                        aCGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGt    >  2:814767/1‑143 (MQ=255)                                                                                                                                          gTTTTAAGGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGttt  <  2:185722/143‑1 (MQ=255)                                                                                                                                          |                                                                                                                                               TTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTT  >  NC_000913/4153557‑4153835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.