BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,299,499	Δ1,199 bp	intergenic (+254/‑485)	ychE → / → oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1299499–1300697	1300697	1–1199	115 [0]	[0] 117	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	108 (1.560)	76/274	0.0	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
*	?	NC_000913	1300698 =	0 (0.000)	108 (1.560)	76/274	0.0	100%	intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

Only 100 of 117 total aligned reads displayed.

TAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGT  >  NC_000913/1300558‑1300840

ttacagttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaata                                                                                                                                               <  1:860245‑M2/3‑1 (MQ=255)

   cagttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataata                                                                                                                                            <  1:746660‑M2/6‑1 (MQ=255)

    agttagttataaggatttccttaactgcttctcctccccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataataa                                                                                                                                           <  1:145065‑M2/7‑1 (MQ=255)

    agttagttataaggatttccttaactgctagtcctgaccatcatgttatttttgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataataa                                                                                                                                           <  2:315087‑M2/7‑1 (MQ=255)

             taaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgacgaataattgaaatgatattattaattccactgccttttgtagatgaaagtgctacATACTTATCAATTGtt                                                                                                                                  >  1:630293‑M2/128‑143 (MQ=255)

             taaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtataggaaagtgctaaATAATAATCAATTGtt                                                                                                                                  >  2:1039819‑M2/128‑143 (MQ=255)

              aaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTa                                                                                                                                 <  1:678130‑M2/17‑1 (MQ=255)

              aaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTa                                                                                                                                 >  1:269983‑M2/127‑143 (MQ=255)

               aggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATtgttta                                                                                                                                <  1:479359‑M2/18‑3 (MQ=255)

                gtctttccttaactgcttctcctcaccatcatgttactttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTaaa                                                                                                                               <  2:1293388‑M2/19‑1 (MQ=255)

                   attgcttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatta                                                                                                                            >  1:944014‑M2/122‑143 (MQ=255)

                    ttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAattat                                                                                                                           >  1:905979‑M2/121‑143 (MQ=255)

                    ttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAAACAATGGTTAAattat                                                                                                                           >  1:170672‑M2/121‑143 (MQ=255)

                     tccttaactgttgctcctcaccatcatgttattttcgccacatcatactcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAattatt                                                                                                                          <  2:1172997‑M2/24‑1 (MQ=255)

                     tccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAattatt                                                                                                                          <  2:1222031‑M2/24‑1 (MQ=255)

                     tcctgaactgcttctcctcaccatcatgttattttcgccacatcataatccttggcttgctgaagtataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAattatt                                                                                                                          <  2:617640‑M2/24‑1 (MQ=255)

                       cttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgacgaatacttgaaatgatattattaattccactccctttgatagagaaaagtgctaaATAATAATAAATTGTTAAATTATtgt                                                                                                                        >  1:1251303‑M2/118‑143 (MQ=255)

                        ttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtgtg                                                                                                                       <  1:396660‑M2/27‑1 (MQ=255)

                        ttaactgcttctcctcaccatcatgttattttcgccacatcataatactgggcttgctgaagaataattgaaatgatattagtaattccactgcctttggtagaggaaagtgctaaAGAATCATCAATGTTTAAATTATtgtg                                                                                                                       >  2:1196801‑M2/117‑143 (MQ=255)

                         taactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGc                                                                                                                      <  2:707326‑M2/28‑1 (MQ=255)

                           atggcttctcctccccatcatgttatttccgccacatcataatcctgggcttgctgaagaataattgaaatgatattatttattccactggctttggtagaggaaagtgctaaTTAATAATCAATTGTTAAATTATTGTGCAt                                                                                                                    <  1:951549‑M2/30‑1 (MQ=255)

                             tgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAttt                                                                                                                  >  2:451006‑M2/112‑143 (MQ=255)

                             tgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAttt                                                                                                                  <  1:835739‑M2/32‑1 (MQ=255)

                             tgctgctcctcaccatcatgttatgttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAttt                                                                                                                  <  1:213277‑M2/32‑1 (MQ=255)

                               cttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattacactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCa                                                                                                                >  2:1120615‑M2/110‑143 (MQ=255)

                               cctctcctcaccttcattttattttcgccacatcataatccttggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCa                                                                                                                <  2:514279‑M2/34‑1 (MQ=255)

                                ttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCac                                                                                                               >  1:1098635‑M2/109‑143 (MQ=255)

                                    cctctccgtcatgttattttcgtcacatcataaccctgggcttgctgaagaataattgaaatgatattattaattccaatgactttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                                                                                                           <  2:773961‑M2/39‑1 (MQ=255)

                                    cctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                                                                                                           >  2:485001‑M2/105‑143 (MQ=255)

                                     ctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagagggaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTg                                                                                                          >  1:1081066‑M2/104‑143 (MQ=255)

                                      tcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTTTTGTGCATTTCACTTCTgg                                                                                                         >  1:197854‑M2/103‑143 (MQ=255)

                                      tcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTgg                                                                                                         <  2:1248851‑M2/41‑1 (MQ=255)

                                      tcaccatcatgttattttagccacatcataatcctgggcttgctgaagaataatttaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTgg                                                                                                         <  1:3133‑M2/41‑1 (MQ=255)

                                        accatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGaa                                                                                                       <  2:928153‑M2/43‑1 (MQ=255)

                                          cgtcaggttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACt                                                                                                     <  1:76539‑M2/45‑1 (MQ=255)

                                          catcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACt                                                                                                     <  1:711046‑M2/45‑1 (MQ=255)

                                          catcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACt                                                                                                     >  1:579623‑M2/99‑143 (MQ=255)

                                           atcatgttattttcgccacatcataatcctgggcttgctgaagcataattgaaatgctattattaattccactgcctttggtagaggacagtgctacATAATAATCAATTGTTACATTATTGTGCATTTCTCTCCTGGgaccg                                                                                                    >  1:331451‑M2/98‑141 (MQ=255)

                                               tgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgactgtggtagaggaaagtgctaaATAATAATCAATTGTTAAATCATTGTGCATTACACTACTGGAACTGTAAt                                                                                                >  2:622976‑M2/94‑143 (MQ=255)

                                                gttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATc                                                                                               <  2:1178336‑M2/51‑1 (MQ=255)

                                                          ccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑a                                                                                    >  1:818351‑M2/83‑143 (MQ=255)

                                                          ccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑a                                                                                    >  1:818359‑M2/83‑143 (MQ=255)

                                                             catcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGAc                                                                                 <  2:954028‑M2/64‑1 (MQ=255)

                                                             catcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGAc                                                                                 >  1:1198352‑M2/80‑143 (MQ=255)

                                                              atcataatcctgggcttgctgaagaataattgaaatgatattattaattcccctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTAGAACTGTAATCAGAAACGAT‑AGACa                                                                                >  2:862258‑M2/79‑143 (MQ=255)

                                                               tcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAAACAGAAAAAAT‑AGACAt                                                                               >  2:4212‑M2/78‑143 (MQ=255)

                                                                 atattccttggcttgttgaagaataattgaaatgatattagtgattccactgctttttgtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAGTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGc                                                                             <  2:704269‑M2/68‑1 (MQ=255)

                                                                   aatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCtt                                                                           >  1:1059802‑M2/74‑143 (MQ=255)

                                                                   aatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTCTAATCAGAAAAGAT‑AGACATGCtt                                                                           >  2:548905‑M2/74‑143 (MQ=255)

                                                                    atcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTa                                                                          <  2:1010038‑M2/71‑1 (MQ=255)

                                                                    accctgtgcttgctgaatactaaatgaaatgatattatcaattccactgcctttggtagaggaaagtgctaaATTATAATCAATTGTTAACTTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTa                                                                          <  2:237663‑M2/71‑1 (MQ=255)

                                                                     tcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagagctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACAACTGGAACAGTAATCAGTAAAGAT‑AGACACTCTTAg                                                                         >  2:606277‑M2/72‑143 (MQ=255)

                                                                        tgggcttgctgaataataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCa                                                                      <  2:63188‑M2/75‑1 (MQ=255)

                                                                            cttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAAtct                                                                  <  2:1243727‑M2/79‑1 (MQ=255)

                                                                               gctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAACTTATTGTGCATTTCACTACTGGCACTGTAATCAGAAAAGAT‑AAACATGCTTAGCCAATCTCTa                                                               >  1:632496‑M2/62‑143 (MQ=255)

                                                                                ctgaagaataattgaaatgatattattgattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTAt                                                              <  1:500989‑M2/83‑1 (MQ=255)

                                                                                 tgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTAtt                                                             >  1:655978‑M2/60‑143 (MQ=255)

                                                                                 tgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTAtt                                                             <  1:675137‑M2/84‑1 (MQ=255)

                                                                                 tgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGAAATGCTTAGCCAATCTCTCtt                                                             >  2:650148‑M2/60‑143 (MQ=255)

                                                                                   aagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGCATTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATttg                                                           >  1:287893‑M2/58‑143 (MQ=255)

                                                                                   aagaataattgaaatgatattattaattccactgcctgtggtagaggaaagtgctaaATAATAATCAATAGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAG‑AGACATGCGTAGCCAGTCTCTAtgtg                                                           >  1:254982‑M2/58‑143 (MQ=255)

                                                                                    agaataattgaaattatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATttga                                                          <  2:341649‑M2/87‑1 (MQ=255)

                                                                                    agaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATttga                                                          <  2:1041763‑M2/87‑1 (MQ=255)

                                                                                         aattgaaatggtattattaattcccctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGattgaa                                                     <  1:1252920‑M2/92‑1 (MQ=255)

                                                                                          attgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGattgaat                                                    >  1:850441‑M2/51‑143 (MQ=255)

                                                                                               aatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCAATTTGATTGAATTGaaa                                               >  1:92662‑M2/46‑143 (MQ=255)

                                                                                                   atattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtg                                           >  1:58866‑M2/42‑143 (MQ=255)

                                                                                                     attattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTACTCCGAAAAGAT‑AGACATGCTTAGCCAATATCTCTTTAATTGAATTGAAAGAggtt                                         >  2:527225‑M2/40‑143 (MQ=255)

                                                                                                      ttattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgttt                                        <  1:634454‑M2/105‑1 (MQ=255)

                                                                                                      ttattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgttt                                        <  1:1087802‑M2/105‑1 (MQ=255)

                                                                                                      ttattaatcccactgcctgtgggagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgttt                                        <  1:26063‑M2/105‑1 (MQ=255)

                                                                                                      gtattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgttt                                        <  2:1292382‑M2/105‑1 (MQ=255)

                                                                                                        attaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgtttgt                                      <  2:1198352‑M2/107‑1 (MQ=255)

                                                                                                         ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑CGCCATGCTTAGCCAATATCTCTTTGATTGAATTGAAAGAtgtttgtt                                     <  1:953851‑M2/108‑1 (MQ=255)

                                                                                                         ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgtttgtt                                     >  1:516023‑M2/36‑143 (MQ=255)

                                                                                                           aattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTaa                                   <  1:323120‑M2/110‑1 (MQ=255)

                                                                                                           aattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTaa                                   <  2:25606‑M2/110‑1 (MQ=255)

                                                                                                           aatgccactgcctttggtagaggaaagtgctaaATAAGAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTaa                                   <  2:167411‑M2/110‑1 (MQ=255)

                                                                                                            attccactgctgttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAg                                  <  2:943976‑M2/111‑1 (MQ=255)

                                                                                                               ccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGGATTGACAGATGTTCGTTACGGCa                               >  2:1200702‑M2/30‑143 (MQ=255)

                                                                                                                cactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGACAt                              >  2:1096553‑M2/29‑143 (MQ=255)

                                                                                                                cactgcccttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCAt                              <  1:1064002‑M2/115‑1 (MQ=255)

                                                                                                                   tgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGa                           >  1:173103‑M2/26‑143 (MQ=255)

                                                                                                                   tgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACACGCTTAGCCAACCACTATTTGATTGAATTGAAAGATGTTCGTTCAGGCATGGa                           >  2:1189010‑M2/26‑143 (MQ=255)

                                                                                                                     cctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATg                         >  1:129631‑M2/24‑143 (MQ=255)

                                                                                                                      ctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGc                        >  1:1156143‑M2/23‑143 (MQ=255)

                                                                                                                      ctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTAGAACTGTAATAAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGc                        >  2:833604‑M2/23‑143 (MQ=255)

                                                                                                                            tagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAGGctc                  >  1:547773‑M2/17‑142 (MQ=255)

                                                                                                                                 gaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGAt             >  2:233243‑M2/12‑143 (MQ=255)

                                                                                                                                   aagtgctaaATAATAATCAATTGTTAAATTGTTGTGGACAACACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTc           <  2:908310‑M2/134‑1 (MQ=255)

                                                                                                                                    agtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCt          >  2:772298‑M2/9‑143 (MQ=255)

                                                                                                                                    agtgctaaATAACAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATACAAGCTATAGATTCt          <  1:1182332‑M2/135‑1 (MQ=255)

                                                                                                                                     gtgctaaATCATAGTCAATTGTTAAATTATTGTGCATTTCACTACTGGATCTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTg         <  2:268218‑M2/136‑1 (MQ=255)

                                                                                                                                        ctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATa      <  1:1212905‑M2/139‑1 (MQ=255)

                                                                                                                                         taaATAATAATTAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATCCGGTTTG‑AAAGCCAGTCTCTATTTGATTCAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATAc     <  1:947003‑M2/140‑1 (MQ=255)

                                                                                                                                         taaATAATAATCAATTGTTAAATTTTTGTGGTTGTAAATACTAAAACGGGAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATAc     <  1:534879‑M2/140‑1 (MQ=255)

                                                                                                                                         taaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGAtaa     >  2:754275‑M2/4‑142 (MQ=255)

                                                                                                                                           aATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACgg   <  2:1136452‑M2/142‑1 (MQ=255)

                                                                                                                                           aATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAACTATAGATTCTGATACgg   <  1:689663‑M2/142‑1 (MQ=255)

                                                                                                                                            ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGt  <  2:29311/143‑1 (MQ=255)

TAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGAT‑AGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGT  >  NC_000913/1300558‑1300840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`