Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258674 258683 10–776 38 [0] [0] 39 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)35 (0.930) 32/268 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

CTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257779‑258048
                                                                                                                                |                                                                                                                                             
cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                                 <  1:485136‑M1/143‑15 (MQ=255)
 tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                >  2:209378‑M1/1‑128 (MQ=255)
 tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                >  1:392390‑M1/1‑128 (MQ=255)
           cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                      >  1:193537‑M1/1‑118 (MQ=255)
            aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                     >  2:403650‑M1/1‑117 (MQ=255)
              tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTCACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                   <  1:232538‑M1/143‑29 (MQ=255)
              gttgGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                   <  2:641209‑M1/142‑29 (MQ=255)
                  gTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGCGGACACCCGAAGAGCCGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGCAGGTAagtgcaaagataatcgattctttttcgattgg                                                                                                               >  1:408710‑M1/1‑111 (MQ=255)
                   tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCTTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                              <  1:50979‑M1/143‑34 (MQ=255)
                   gaaaacACTTGCAGCACAACAGGAGATACGAATGACGTTACCGAGTGGACACCAGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                              <  2:134711‑M1/142‑34 (MQ=255)
                      aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                           >  1:665146‑M1/1‑107 (MQ=255)
                        cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                         <  1:114747‑M1/143‑39 (MQ=255)
                             tcaTCACAACAGGTGATAGTAATGTTGTTACCGAGTGGACACTCGAAGAGTAGATTGATCAAAAAATTTACCGCACTAGGCCCTTATATTCGTGAAGGTAagtgtaaagataatcgattctttttcgattgtctggctgtatg                                                                                                    <  2:571566‑M1/142‑44 (MQ=255)
                               aTCATAACAGGAGATAGCAATGACGTTACCGAGTGGACACACGACGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTGGTGAAGGTAagtgcaaagataagctattctttttcgattgtctggttgtatgcg                                                                                                  >  2:594733‑M1/1‑98 (MQ=255)
                                tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt                                                                                                 >  1:628771‑M1/1‑97 (MQ=255)
                                      caGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt                                                                                           >  1:678844‑M1/1‑91 (MQ=255)
                                               gCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggc                                                                                  >  1:372426‑M1/1‑82 (MQ=255)
                                                  aTGACGTCACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc                                                                               <  1:396763‑M1/143‑65 (MQ=255)
                                                     aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACGAGGCCCGTATATTCATGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgga                                                                            >  2:608723‑M1/1‑76 (MQ=255)
                                                        ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagcgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacccgcaccggaagt                                                                         >  2:643739‑M1/1‑73 (MQ=255)
                                                          aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                       <  1:590578‑M1/143‑73 (MQ=255)
                                                            cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                     <  2:437728‑M1/143‑75 (MQ=255)
                                                                  gACACGCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGCATATTCGTGAAGGTAagtgcaacgataatcgatgctttttcgattgtccggctgtatgcgtcaacgtgaaaccggcaccggaggtgcgggcactc                                                               >  2:485957‑M1/1‑63 (MQ=255)
                                                                   acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTCTATTCGTGAAGGTAagcgcaaagagactcgcttcttgttcgattgtctggctgtatgcgtcaacgtgacacggacaccggacgctcgtgcattcc                                                              >  2:10242‑M1/1‑62 (MQ=255)
                                                                    cgcccgaAGGGCAGATTGATCAAAAAATTGACGGGACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatagtcgattctttttcgattgtctggctgtatgcggcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                             <  2:519177‑M1/141‑83 (MQ=255)
                                                                       ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                          >  2:213637‑M1/1‑58 (MQ=255)
                                                                            gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATAATCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgagaattctaggcacggt                                                     >  2:636129‑M1/1‑53 (MQ=255)
                                                                               cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGGAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgga                                                  <  2:727415‑M1/143‑94 (MQ=255)
                                                                                 gATTGATCAAAAAATTTACCGCACTAGGACCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctagctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                                >  2:527340‑M1/1‑48 (MQ=255)
                                                                                        cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                         <  1:505514‑M1/143‑103 (MQ=255)
                                                                                                   ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatctattctttttcgattgtcgggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaa                              <  2:271936‑M1/143‑114 (MQ=255)
                                                                                                       acgaggcCGGTATATTCGGGAAGGTAagtgcaaagataatcgattcttgttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc                          <  1:329739‑M1/140‑118 (MQ=255)
                                                                                                             cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatacgtcaacttttttccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                    <  1:456081‑M1/143‑124 (MQ=255)
                                                                                                                gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggcggtatgcgtcaacgtgaaaccggccccgggcgtgcctggcttctggggctggtggatggagcgggtagcgcaggaaacacgttttacct                 >  1:206222‑M1/1‑17 (MQ=255)
                                                                                                                   tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggcgctggaagcgcaggaatcccgttttacctaca              >  1:324113‑M1/1‑14 (MQ=255)
                                                                                                                             ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtt    <  1:209378‑M1/143‑140 (MQ=255)
                                                                                                                              gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacaagttt   >  1:601199‑M1/1‑3 (MQ=255)
                                                                                                                               tAagtgcaaagcgaagcgattcgttgtcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg  <  2:392390‑M1/143‑142 (MQ=255)
                                                                                                                                |                                                                                                                                             
CTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257779‑258048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.