Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258674 258683 10–776 38 [0] [0] 39 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)35 (0.930) 32/268 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258555‑258826
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ctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                   <  1:485136‑M2/14‑1 (MQ=255)
 taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                  >  2:209378‑M2/129‑143 (MQ=255)
 taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                  >  1:392390‑M2/129‑143 (MQ=255)
           caatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                        >  1:193537‑M2/119‑143 (MQ=255)
            aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                                                                                                                       >  2:403650‑M2/118‑143 (MQ=255)
              tttggtaaaacagttgcatcacaacaggagatagcaatgacgtcaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                                                                                                                     <  1:232538‑M2/28‑1 (MQ=255)
              gttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                                                                                                                     <  2:641209‑M2/28‑1 (MQ=255)
                  gtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagcggacacccgaagagccgattgatcaaaaaatttaccgcactaggcccgtatattcgtgcaggtaAGTGCAAAGATAATCGATTCTTTTTCGATtgg                                                                                                                 >  1:408710‑M2/112‑142 (MQ=255)
                   taaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccttatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                                                                                                                <  1:50979‑M2/33‑1 (MQ=255)
                   gaaaacacttgcagcacaacaggagatacgaatgacgttaccgagtggacaccagaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                                                                                                                <  2:134711‑M2/33‑1 (MQ=255)
                      aacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg                                                                                                             >  1:665146‑M2/108‑143 (MQ=255)
                        cagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt                                                                                                           <  1:114747‑M2/38‑1 (MQ=255)
                             tcatcacaacaggtgatagtaatgttgttaccgagtggacactcgaagagtagattgatcaaaaaatttaccgcactaggcccttatattcgtgaaggtaAGTGTAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg                                                                                                      <  2:571566‑M2/43‑1 (MQ=255)
                               atcataacaggagatagcaatgacgttaccgagtggacacacgacgagcagattgatcaaaaaatttaccgcactaggcccgtatattggtgaaggtaAGTGCAAAGATAAGCTATTCTTTTTCGATTGTCTGGTTGTATGCg                                                                                                    >  2:594733‑M2/99‑143 (MQ=255)
                                tcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt                                                                                                   >  1:628771‑M2/98‑143 (MQ=255)
                                      caggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGt                                                                                             >  1:678844‑M2/92‑143 (MQ=255)
                                               gcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGc                                                                                    >  1:372426‑M2/83‑143 (MQ=255)
                                                  atgacgtcaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAcc                                                                                 <  1:396763‑M2/64‑1 (MQ=255)
                                                     acgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcacgaggcccgtatattcatgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGa                                                                              >  2:608723‑M2/77‑143 (MQ=255)
                                                        ttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGCGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCCGCACCGGAAGt                                                                           >  2:643739‑M2/74‑143 (MQ=255)
                                                          accgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGc                                                                         <  1:590578‑M2/72‑1 (MQ=255)
                                                            cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGt                                                                       <  2:437728‑M2/74‑1 (MQ=255)
                                                                  gacacgcgaagagcagattgatcaaaaaatttaccgcactaggcccgcatattcgtgaaggtaAGTGCAACGATAATCGATGCTTTTTCGATTGTCCGGCTGTATGCGTCAACGTGAAACCGGCACCGgaggtgcgggcactc                                                                 >  2:485957‑M2/64‑136 (MQ=255)
                                                                   acacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtctattcgtgaaggtaAGCGCAAAGAGACTCGCTTCTTGTTCGATTGTCTGGCTGTATGCGTCAACGTGACACGGACACCGGACGCTCGTGCATtcc                                                                >  2:10242‑M2/63‑142 (MQ=255)
                                                                    cgcccgaagggcagattgatcaaaaaattgacgggactaggcccgtatattcgtgaaggtaAGTGCAAAGATAGTCGATTCTTTTTCGATTGTCTGGCTGTATGCGGCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg                                                               <  2:519177‑M2/82‑1 (MQ=255)
                                                                       ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgggg                                                            >  2:213637‑M2/59‑143 (MQ=255)
                                                                            gagcagattgatcaaaaaatttaccgcactaggcccgtataatcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGGGCGAGaattctaggcacggt                                                       >  2:636129‑M2/54‑137 (MQ=255)
                                                                               cagattgatcaaaaaatttaccgcactaggcccgtatattcgtggaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtgga                                                    <  2:727415‑M2/93‑1 (MQ=255)
                                                                                 gattgatcaaaaaatttaccgcactaggaccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTAGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg                                                  >  2:527340‑M2/49‑143 (MQ=255)
                                                                                        caaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTgg                                           <  1:505514‑M2/102‑1 (MQ=255)
                                                                                                   ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCTATTCTTTTTCGATTGTCGGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGaa                                <  2:271936‑M2/113‑1 (MQ=255)
                                                                                                       acgaggccggtatattcgggaaggtaAGTGCAAAGATAATCGATTCTTGTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATccc                            <  1:329739‑M2/117‑1 (MQ=255)
                                                                                                             cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATACGTCAACTTTTTTCCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTa                      <  1:456081‑M2/123‑1 (MQ=255)
                                                                                                                gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCGGTATGCGTCAACGTGAAACCGGCCCCGGGCGTGCCTGGCTTCTGGGGCTGGTGGATGGAGCGGGTAGCGCAGGAAACACGTTTTACCt                   >  1:206222‑M2/18‑143 (MQ=255)
                                                                                                                   tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGCGCTGGAAGCGCAGGAATCCCGTTTTACCTACa                >  1:324113‑M2/15‑143 (MQ=255)
                                                                                                                             ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGtt      <  1:209378‑M2/139‑1 (MQ=255)
                                                                                                                              gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACAAGttt     >  1:601199‑M2/4‑143 (MQ=255)
                                                                                                                               taAGTGCAAAGCGAAGCGATTCGTTGTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg    <  2:392390‑M2/141‑1 (MQ=255)
                                                                                                                                 aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGt  <  2:678844/143‑1 (MQ=255)
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TTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258555‑258826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: