Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,001,645	Δ5 bp	coding (220‑224/951 nt)	corA →	magnesium/nickel/cobalt transporter

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4001645	4001649	5	52 [0]	[0] 51	corA	magnesium/nickel/cobalt transporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4001644	0 (0.000)	51 (0.790)	45/284	0.4	100%	coding (219/951 nt)	corA	magnesium/nickel/cobalt transporter
	?	NC_000913	4001650 =	0 (0.000)					coding (225/951 nt)	corA	magnesium/nickel/cobalt transporter

ATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTAGCCA  >  NC_000913/4001510‑4001790                                                                                                                                             |                                                                                                                                             tatggattgatcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatctc                                                                                                                                            >  1:641176‑M2/141‑143 (MQ=255)      attgatcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttct                                                                                                                                       >  1:317220‑M2/136‑143 (MQ=255)      attgatcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacaccgacgaatcggaacattacgttgaagacgacgacggcctgcatCTCcttct                                                                                                                                       <  2:413156‑M2/8‑1 (MQ=255)             ttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatctcctgcttctcact                                                                                                                                >  2:1124150‑M2/129‑139 (MQ=255)              tgtcgaaccgcacgacgacgagcgactgcgcgtacaagctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCttt                                                                                                                               <  1:66023‑M2/16‑1 (MQ=255)               gccgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTg                                                                                                                              <  1:643208‑M2/17‑1 (MQ=255)                 cgacccggacgacgacgcgcgaccgcgcgtacaagctgaccttggccagagcctggcaacccgcccggaactgcaagacatcgaagcatcggcacgtttctttgtagacgacgacggcctgcatCTCCTTCTTCTTCTTTGaa                                                                                                                            <  2:441523‑M2/19‑1 (MQ=255)                       ggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgttcctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGCTGCg                                                                                                                      >  2:584372‑M2/119‑143 (MQ=255)                              gacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATc                                                                                                               >  1:193474‑M2/112‑143 (MQ=255)                                 gagcgactgcgcgtacaatctggtcttggccaggggctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACg                                                                                                            <  2:95863‑M2/35‑1 (MQ=255)                                 gagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGCTGCGGCAGATCACg                                                                                                            >  1:1027338‑M2/109‑143 (MQ=255)                                  agcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCAGGc                                                                                                           <  1:682433‑M2/36‑1 (MQ=255)                                    cgcctgcgcgtacaatctgaccttggcctggttctgccacccccccctgaactgtaagacatcgaagcatcggcacgtttctttgaagacgacaacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCg                                                                                                         <  1:157797‑M2/38‑1 (MQ=255)                                    cgactgcgcgtacaatctgaacttggcccgagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCg                                                                                                         <  2:1023049‑M2/38‑1 (MQ=255)                                      actgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCGCGCCGGt                                                                                                       >  2:211308‑M2/104‑143 (MQ=255)                                        tgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGCAGATCACGCCGGTaa                                                                                                     >  2:37592‑M2/102‑143 (MQ=255)                                         gcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAAc                                                                                                    >  2:62329‑M2/101‑143 (MQ=255)                                          ggcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcagCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACt                                                                                                   <  2:198919‑M2/44‑1 (MQ=255)                                              tacaatctgaacttggccagagcctggcaacccgcccggaactgggagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCAc                                                                                               >  1:943530‑M2/96‑143 (MQ=255)                                              tacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCAc                                                                                               >  1:943578‑M2/96‑143 (MQ=255)                                                 aatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACtgt                                                                                            <  1:771908‑M2/51‑1 (MQ=255)                                                               cagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATcc                                                                              >  1:346345‑M2/79‑143 (MQ=255)                                                                    cctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATGACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGAt                                                                         >  1:811030‑M2/74‑143 (MQ=255)                                                                    cctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCGGTGAt                                                                         >  1:811024‑M2/74‑143 (MQ=255)                                                                     ctggcagcccggccggacctggaaggcatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATg                                                                        <  2:79715‑M2/71‑1 (MQ=255)                                                                     ctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATg                                                                        <  1:503794‑M2/71‑1 (MQ=255)                                                                     ctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttcgttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCGCGCCGAGAACGCCACTGTGGCATGTACCATCCGTGCTg                                                                        >  1:289922‑M2/73‑143 (MQ=255)                                                                      tggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTGTGCGAGGATGCGGAAGCTCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATgg                                                                       >  1:376440‑M2/72‑143 (MQ=255)                                                                              cgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGt                                                               <  1:1099332‑M2/80‑1 (MQ=255)                                                                                 ccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcaaCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTa                                                            <  1:884586‑M2/83‑1 (MQ=255)                                                                                     acccggaagacatcgaagcctcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTActct                                                        <  1:24013‑M2/87‑1 (MQ=255)                                                                                       caacaagacgtcgacgcatcgggacgcttccttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTACCTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTgc                                                      <  1:256530‑M2/89‑1 (MQ=255)                                                                                          gaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCCGTAACTCCACTGTCGCATTTACCATCCGCGCTGGTCGCCGGTGTCCTCTgcgtg                                                   >  2:716160‑M2/52‑143 (MQ=255)                                                                                            agacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATGCGTGATGGTCGGATGTTTACTCTgcgtgag                                                 >  1:182084‑M2/50‑143 (MQ=255)                                                                                               catcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCTGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTgcgtgagcgt                                              <  1:734959‑M2/97‑1 (MQ=255)                                                                                                atcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTCGCAGATGCGGCAGATCACGCCGGTCACTCCACTGTGGCATTTACCATCCGTACTGGCCGCCTCTTTACtctgcgtcagcctc                                             >  2:794252‑M2/46‑140 (MQ=255)                                                                                                atcgaagcatcggcacgtttctttgaagacgaagacggcttgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTgcgtgagcgtg                                             >  1:50129‑M2/46‑143 (MQ=255)                                                                                                 tcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGCCTGTTTACTCTgcgtgcccgtga                                            >  1:282304‑M2/45‑143 (MQ=255)                                                                                                 tcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTGCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTgcgtgagcgtga                                            >  1:139588‑M2/45‑143 (MQ=255)                                                                                                  cgaagcatgggcacgtttctttgaagacgacggcggcctgcagCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGaa                                           <  2:213165‑M2/100‑1 (MQ=255)                                                                                                      gcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGc                                       <  1:74906‑M2/104‑1 (MQ=255)                                                                                                           ggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGCAGATGCGGAAGCTAGGGGGGGTAACTCCACTGTGGCGTTTACCCTCCGTGCTGGTCGTCTGTTTACTCTGCGTGAGCGGGCGCTGCCCGCt                                  >  1:1159248‑M2/35‑143 (MQ=255)                                                                                                                 tttcgttgcagacgacgacggcctgcctCTCTTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTATCTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGt                            <  2:809257‑M2/115‑1 (MQ=255)                                                                                                                  ttctttgcagacgacgacggtctgcatCTCCTTCTTCTTCTTTGCAGCTGCGGAAGATCCCGCCGGTAACTCCACTGTGGCATTTACCATCCGTGCTGGTCGAACATACACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTc                           <  2:139588‑M2/116‑1 (MQ=255)                                                                                                                  ttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTc                           >  1:4886‑M2/28‑143 (MQ=255)                                                                                                                         aagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGGGAACTGCGCGCTTTTCGGCTGTATCg                    >  1:723586‑M2/21‑143 (MQ=255)                                                                                                                            acgacgacggcctgcatCTCCTTCATCTTCTTGGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTAt                 <  1:211308‑M2/126‑1 (MQ=255)                                                                                                                                cgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGGGATGGTCGTCTGATTAGTCTGCGTGAGCGTGAAATGCCGGCTTTTGGTCTGTAGCGACTGcgc             >  2:1034181‑M2/14‑142 (MQ=255)                                                                                                                                 gacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACGATCCGTGATGGTCGTCTGTTTACTCTGCGTGCGCGGGAACTGCCCTCTCTTCGTCTGTATCCtacgcggc            >  2:922488‑M2/13‑141 (MQ=255)                                                                                                                                  acggcctgtatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACGGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGc           <  2:176080‑M2/132‑1 (MQ=255)                                                                                                                                           atCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATCCCCGTCGGGATACTTTGAGTGCGACAGAACTGCCCGCTTTTCGTCTGTGTCGTGTGCGTGCCCGTAGCCa  >  2:825428‑M2/3‑143 (MQ=255)                                                                                                                                             |                                                                                                                                             ATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTAGCCA  >  NC_000913/4001510‑4001790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑