Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908 258683 776 62 [2] [0] 61 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579072 (0.030)57 (0.980) 45/268 0.2 98.4% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

GTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257767‑258048
                                                                                                                                            |                                                                                                                                             
gtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAACCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAag                                                                                                                                             <  2:655924‑M1/143‑3 (MQ=255)
 ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTCCCGAGTGGACACCCGAAGAGCCGATTGATCAAAAAATTTACCGCACTCGGCCCCTATATTCGCGAAGGTAcgt                                                                                                                                            >  1:965048‑M1/1‑140 (MQ=255)
 ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACTGCGCCGGCACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                            >  1:257979‑M1/1‑140 (MQ=255)
 ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                            <  1:655776‑M1/143‑4 (MQ=255)
 ttAAAAATTTGCTAAATTTTGCCAATTCGGTAAAACAGTTGCATCCCAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                            <  2:257470‑M1/143‑4 (MQ=255)
  tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTCGCATCACAACCGGACATAGCAATGACGCTCACGACTGGACACCCGAAGAGCAGCTTGATCAAAAAATTTACCGCACTAGGCCCGTATACTCGTCAAGGTAagtg                                                                                                                                           >  1:547428‑M1/1‑139 (MQ=255)
   aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATAGATCAAAACATTTACCGCACTCGGCCGGTATATTCGTGAAGGTAagtgc                                                                                                                                          >  2:493514‑M1/1‑138 (MQ=255)
    aaagTTTGCTAAATTTTGCCAATTGGGGAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGGAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca                                                                                                                                         <  1:397507‑M1/143‑7 (MQ=255)
      atttttCTAATTTTTGCCAATTTTGTAAAACAGTTGCATCGCACCGGGACATAGTAATGACCTTACCGATTGGTCACCTGAAGAGCAGATTGATCAAAAAATTTACCGCTCTAGTCCCGTATTTTCGTGAaggtaagtgcaaa                                                                                                                                       <  2:915851/141‑6 (MQ=255)
      aaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa                                                                                                                                       <  2:509235‑M1/143‑9 (MQ=255)
          tGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGTGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATGGATCCAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagata                                                                                                                                   >  1:78205‑M1/1‑131 (MQ=255)
           gcgaaaatttGCCAATTTGGTAAAACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa                                                                                                                                  <  2:656808‑M1/140‑14 (MQ=255)
            cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGAATATTCGTGAGGGTAcgtgcaaagataag                                                                                                                                 >  2:460142‑M1/1‑129 (MQ=255)
               aaTTTGGACAATTTGGTAAAACAGTTGCATCAAAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga                                                                                                                              <  1:106682‑M1/143‑18 (MQ=255)
                         aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                    >  2:237413‑M1/1‑116 (MQ=255)
                         aTTTGGTAAAACACTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                    <  2:556011‑M1/143‑28 (MQ=255)
                               tacaacagCTCCATCACGCTAGCAGATAGCCATGACTTTACCGAGTGGACACCCGAAGAGCAGATTGATCTAACACTTTACCGCACTACGCCCGTATATTCGTGAAGTTAagtgcaaagataatcgattctttttcgattgtc                                                                                                              <  2:98422‑M1/140‑34 (MQ=255)
                                  aagagtgGCACCACAACAGGGGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACGAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                           <  2:1065315‑M1/140‑37 (MQ=255)
                                            tCACATCAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt                                                                                                 <  1:667666‑M1/143‑47 (MQ=255)
                                                aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatcgagtctttttcgattgcctggctgtacgcgcgaag                                                                                             >  2:539‑M1/1‑93 (MQ=255)
                                                aacaGGAGATAGCAAGGACGTCACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                             <  1:241643‑M1/143‑51 (MQ=255)
                                                  caGGGGATAGAAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcgttttcgattgtctggctgtatgcgtcaacgt                                                                                           <  2:42706‑M1/143‑53 (MQ=255)
                                                             aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtccacgtgaaaccggccc                                                                                >  1:372733‑M1/1‑80 (MQ=255)
                                                             aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                                >  1:1086737‑M1/1‑80 (MQ=255)
                                                             aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATAGTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                                >  1:260230‑M1/1‑80 (MQ=255)
                                                               tGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccg                                                                              >  1:642363‑M1/1‑78 (MQ=255)
                                                                gccgtTACAGAGCGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgg                                                                             <  1:826361‑M1/141‑67 (MQ=255)
                                                                aacGTTACCGGGCGGACACCCGAAGGGCAGATTGCTCAAAACATGTACCGCACTAGGCCCGTATATTCGGGAAGTCAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgg                                                                             <  2:560428‑M1/142‑67 (MQ=255)
                                                                 aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaagccggcaccgga                                                                            >  1:959605‑M1/1‑76 (MQ=255)
                                                                   gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCTCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaag                                                                          <  1:1042149‑M1/143‑70 (MQ=255)
                                                                     tACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgcttgtctggctgtatgcgtcaacgtgaaccgggcaacgggagtg                                                                        >  2:406393‑M1/1‑72 (MQ=255)
                                                                        cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCTTTAGGCCGGTATATTGGTGATGGTAagtgcaaagataatcgatttattttcggttgtctggctgcatgcgtcaacgtggaagcggcacaggaaatacgt                                                                     >  2:134500‑M1/1‑69 (MQ=255)
                                                                        cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCGGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgggtcaacgtgaaaacggcgccgggagtgcgt                                                                     >  1:388359‑M1/1‑69 (MQ=255)
                                                                        cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgcttgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgggt                                                                     >  1:555286‑M1/1‑69 (MQ=255)
                                                                        cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                     >  1:648788‑M1/1‑69 (MQ=255)
                                                                        cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcccttgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                     <  1:576294‑M1/143‑75 (MQ=255)
                                                                          aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCTCTAGGCCCGGATATTCGGGAAGGTAagtgcaaagataatcgattcgttttcgattctctggctgtacgcgtcaacgtgacaccgccacctgatgtgtgaca                                                                   >  2:500636‑M1/1‑67 (MQ=255)
                                                                                   gcgAAGAGCAGATTGATCAAAAAAGTTAGCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttgtcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                          <  1:851668‑M1/142‑86 (MQ=255)
                                                                                   ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattatatagacctaggcgttaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                          >  1:208084‑M1/1‑58 (MQ=255)
                                                                                   ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatcgattctttttcgattgcctggctgtatgcgccaacgtgaaaccggcaccggaagggcgggaatactaggg                                                          >  2:34248‑M1/1‑58 (MQ=255)
                                                                                        gaggagATGCATGAAAGAAGTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                     <  2:772950‑M1/143‑91 (MQ=255)
                                                                                         agCAGAGTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGGGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                    <  2:421178‑M1/143‑92 (MQ=255)
                                                                                          gCAGATCGATCAAAAAATTCCCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttcttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgg                                                   <  1:1020920‑M1/143‑93 (MQ=255)
                                                                                            aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAggtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                 >  1:481558‑M1/1‑49 (MQ=255)
                                                                                            aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                 <  1:28088‑M1/143‑95 (MQ=255)
                                                                                                   tcacataatttaccGCGCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                          <  1:327701‑M1/137‑102 (MQ=255)
                                                                                                    cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgataccggcaccggaagtgcgtgagttctggggctggtggttggagctgg                                         >  1:130116‑M1/1‑41 (MQ=255)
                                                                                                     aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaccgtgaaaccgggaccggaagtgcgtgcattctgtggctggtggaggggggtgga                                        >  1:661815‑M1/1‑40 (MQ=255)
                                                                                                     aaaaaaTTTACCGCACTAGGCCCGGATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                        >  1:181248‑M1/1‑40 (MQ=255)
                                                                                                      aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgtgtcaacgtgcaaccggcacgggaagtgcgtgaattctggggctggtggatggcgctggaa                                       >  2:200554‑M1/1‑39 (MQ=255)
                                                                                                           tttACCGCACTATGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                  <  2:559180‑M1/143‑110 (MQ=255)
                                                                                                                cacacTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggcat                             >  1:30969‑M1/3‑29 (MQ=255)
                                                                                                                        gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgcaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt                     <  1:675059‑M1/143‑123 (MQ=255)
                                                                                                                          ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgccggaaccccgtcttac                   >  1:219245‑M1/1‑19 (MQ=255)
                                                                                                                          ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                   >  2:246419‑M1/1‑19 (MQ=255)
                                                                                                                           cGTATATTCGTGAAGTTAagtgcaaagctaatcgatacgttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacc                  <  1:374092‑M1/143‑126 (MQ=255)
                                                                                                                             tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtccacgtgaaaccggcacaggaaggaacctggtcgtggggctggtggatggagctggaagcgcaggaatcccggtttaccta                >  1:1111308‑M1/1‑16 (MQ=255)
                                                                                                                                    gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacgtacaggtac         >  2:575183‑M1/1‑9 (MQ=255)
                                                                                                                                       gggccaggtaATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTAt      <  1:346042/138‑1 (MQ=11)
                                                                                                                                         ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtt    <  1:613399‑M1/143‑140 (MQ=255)
                                                                                                                                          gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagttt   <  1:779792‑M1/143‑141 (MQ=255)
                                                                                                                                           tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg  <  1:591345‑M1/143‑142 (MQ=255)
                                                                                                                                            |                                                                                                                                             
GTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/257767‑258048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: