| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 62 [2] | [0] 61 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 2 (0.030) | 57 (0.980) | 45/268 | 0.2 | 98.4% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258543‑258824 | gttaaaaatttgctaaattttgccaatttggtaaaccagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg < 2:655924‑M2/2‑1 (MQ=255) ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttcccgagtggacacccgaagagccgattgatcaaaaaatttaccgcactcggcccctatattcgcgaaggtaCGt > 1:965048‑M2/141‑143 (MQ=255) ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttactgcgccggcacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt > 1:257979‑M2/141‑143 (MQ=255) ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:655776‑M2/3‑1 (MQ=255) ttaaaaatttgctaaattttgccaattcggtaaaacagttgcatcccaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 2:257470‑M2/3‑1 (MQ=255) taaaaatttgctaaattttgccaatttggtaaaacagtcgcatcacaaccggacatagcaatgacgctcacgactggacacccgaagagcagcttgatcaaaaaatttaccgcactaggcccgtatactcgtcaaggtaAGTg > 1:547428‑M2/140‑143 (MQ=255) aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagatagatcaaaacatttaccgcactcggccggtatattcgtgaaggtaAGTGc > 2:493514‑M2/139‑143 (MQ=255) aaagtttgctaaattttgccaattggggaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccggagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa < 1:397507‑M2/6‑1 (MQ=255) aatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa < 2:509235‑M2/8‑1 (MQ=255) tgctaaattttgccaatttggtaaaacagttgcatcacaacaggtgatagcaatgacgttaccgagtggacacccgaagagcagatggatccaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATa > 1:78205‑M2/132‑143 (MQ=255) gcgaaaatttgccaatttggtaaaacaggtgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa < 2:656808‑M2/13‑1 (MQ=255) ctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgaatattcgtgagggtaCGTGCAAAGAtaag > 2:460142‑M2/130‑142 (MQ=255) aatttggacaatttggtaaaacagttgcatcaaaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa < 1:106682‑M2/17‑1 (MQ=255) atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg > 2:237413‑M2/117‑143 (MQ=255) atttggtaaaacacttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg < 2:556011‑M2/27‑1 (MQ=255) tacaacagctccatcacgctagcagatagccatgactttaccgagtggacacccgaagagcagattgatctaacactttaccgcactacgcccgtatattcgtgaagttaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc < 2:98422‑M2/33‑1 (MQ=255) aagagtggcaccacaacaggggatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcacgaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 2:1065315‑M2/36‑1 (MQ=255) tcacatcaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt < 1:667666‑M2/46‑1 (MQ=255) aacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagggaAGTGCAAAGATAATCGAGTCTTTTTCGATTGCCTGGctgtacgcgcgaag > 2:539‑M2/94‑138 (MQ=255) aacaggagatagcaaggacgtcaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc < 1:241643‑M2/50‑1 (MQ=255) caggggatagaaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCGTTTTCGATTGTCTGGCTGTATGCGTCAACGt < 2:42706‑M2/52‑1 (MQ=255) aatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCCACGTGAAACCggccc > 1:372733‑M2/81‑141 (MQ=255) aatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAc > 1:1086737‑M2/81‑143 (MQ=255) aatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatagtcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAc > 1:260230‑M2/81‑143 (MQ=255) tgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCg > 1:642363‑M2/79‑143 (MQ=255) gccgttacagagcggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCgg < 1:826361‑M2/66‑1 (MQ=255) aacgttaccgggcggacacccgaagggcagattgctcaaaacatgtaccgcactaggcccgtatattcgggaagtcaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCgg < 2:560428‑M2/66‑1 (MQ=255) acgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAGCCGGCACCGGa > 1:959605‑M2/77‑143 (MQ=255) gttaccgagtggacacccgaagagcagattgatcaaaaaatttacctcactaggcccgtatattcgtgaaggtaAGTGCAAAGAGAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑g < 1:1042149‑M2/69‑1 (MQ=255) taccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTATGCGTCAACGTGAACCGGGCAACGGGA‑GTg > 2:406393‑M2/73‑143 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttaccgctttaggccggtatattggtgatggtaAGTGCAAAGATAATCGATTTATTTTCGGTTGTCTGGCTGCATGCGTCAACGTGGAAGCGGCACAGGAA‑ATACGt > 2:134500‑M2/70‑143 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggccggtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGGGTCAACGTGAAAACGGCGCCGGGA‑GTGCGt > 1:388359‑M2/70‑143 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGGGt > 1:555286‑M2/70‑143 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGt > 1:648788‑M2/70‑143 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCCCTTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGt < 1:576294‑M2/74‑1 (MQ=255) agtggacacccgaagagcagattgatcaaaaaatttaccgctctaggcccggatattcgggaaggtaAGTGCAAAGATAATCGATTCGTTTTCGATTCTCTGGCTGTACGCGTCAACGTGACACCGCCAcctgat‑gtgtgaca > 2:500636‑M2/68‑138 (MQ=255) gcgaagagcagattgatcaaaaaagttagcgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTGTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTgggg < 1:851668‑M2/85‑1 (MQ=255) ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTATATAGACCTAGGCGTTAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTgggg > 1:208084‑M2/59‑143 (MQ=255) ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagggaAGTGCAAAGATAATCGATTCTTTTTCGATTGCCTGGCTGTATGCGCCAACGTGAAACCGGCACCGGAA‑GGGCGGGAATACTaggg > 2:34248‑M2/59‑143 (MQ=255) gaggagatgcatgaaagaagttaccgcactaggcccgtatatgcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCtggt < 2:772950‑M2/90‑1 (MQ=255) agcagagtgatcaaaaaatttaccgcactaggcccgtatattcgggaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCtggtg < 2:421178‑M2/91‑1 (MQ=255) gcagatcgatcaaaaaattccccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTCTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCtggtgg < 1:1020920‑M2/92‑1 (MQ=255) agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaGGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGtggat > 1:481558‑M2/50‑143 (MQ=255) agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGtggat < 1:28088‑M2/94‑1 (MQ=255) tcacataatttaccgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTg < 1:327701‑M2/101‑1 (MQ=255) caaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGATACCGGCACCGGAA‑GTGCGTGAGTTCTGGGGCTGGTGGTTGGAGCTgg > 1:130116‑M2/42‑143 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCACCGTGAAACCGGGACCGGAA‑GTGCGTGCATTCTGTGGCTGGTGGAGGGGGGTGGa > 1:661815‑M2/41‑143 (MQ=255) aaaaaatttaccgcactaggcccggatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa > 1:181248‑M2/41‑143 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGTGTCAACGTGCAACCGGCACGGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGCGCTGGaa > 2:200554‑M2/40‑143 (MQ=255) tttaccgcactatgcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa < 2:559180‑M2/109‑1 (MQ=255) cacactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGCAt > 1:30969‑M2/30‑143 (MQ=255) gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGCAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtttt < 1:675059‑M2/122‑1 (MQ=255) ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCCGGAACCCCGTCTTAc > 1:219245‑M2/20‑143 (MQ=255) ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc > 2:246419‑M2/20‑143 (MQ=255) cgtatattcgtgaagttaAGTGCAAAGCTAATCGATACGTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAcc < 1:374092‑M2/125‑1 (MQ=255) tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCCACGTGAAACCGGCACAGGAAGGAACCTG‑GTCGTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGGTTTACCTa > 1:1111308‑M2/17‑143 (MQ=255) gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACGTACAGGTAc > 2:575183‑M2/10‑143 (MQ=255) ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGtt < 1:613399‑M2/139‑1 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGttt < 1:779792‑M2/140‑1 (MQ=255) tgaGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCGGTAGGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg < 1:927684/141‑1 (MQ=255) taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg < 1:591345‑M2/141‑1 (MQ=255) | TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA‑GTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258543‑258824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |