Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,589,990 +G :: IS2 (+) +4 bp pseudogene (87‑90/1227 nt) ydeT ← pseudogene; putative outer membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1589990 =0 (0.000)58 (1.140) 49/284 0.1 100% pseudogene (90/1227 nt) ydeT pseudogene; putative outer membrane protein
?NC_000913 = 1651548 NA (NA)noncoding (706/706 nt) IS2 repeat region
* ? NC_000913 = 15899930 (0.000)65 (1.270) 57/284 0.0 100% pseudogene (87/1227 nt) ydeT pseudogene; putative outer membrane protein
?NC_000913 4498180 = NA (NA)intergenic (+240/‑92) intB/insC1 pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA

Only 100 of 126 total aligned reads displayed.

TGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTA  >  NC_000913/1589848‑1590132
                                                                                                                                              |                                                                                                                                              
tGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCCTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCAATGGTGTCTCAGGTAGCAGACTTGACGgtg                                                                                                                                                >  2:437803/1‑143 (MQ=255)
accttgcagaggcgttcgagcattgtaacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccag                                                                                                                                                >  2:166741‑M1/143‑143 (MQ=255)
accttgcagaggcgttcgagcattataacgaagggcatccgcatagtgcgctgggttatcgctcgccacgggaatagctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccag                                                                                                                                                >  1:907952‑M1/143‑143 (MQ=255)
accctgcaggggtcttcgagcattataaccattggcggccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccag                                                                                                                                                >  2:898657‑M1/143‑143 (MQ=255)
 ccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggataagtgataacagatgtctggaaatataggggcaaatccaGt                                                                                                                                               <  1:264522‑M1/2‑1 (MQ=255)
  cttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTa                                                                                                                                              <  2:706129‑M1/3‑1 (MQ=255)
   ttgcagaggcgttcgagcattataacgaatggcagccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTaa                                                                                                                                             >  1:720162‑M1/140‑143 (MQ=255)
    aCTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAg                                                                                                                                            >  1:438546‑M1/1‑142 (MQ=255)
      tgtaaaatggCGTATCGTTACTCCCAAGCTGCTGAGAGATGTTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgta                                                                                                                                          <  2:769807‑M1/140‑4 (MQ=255)
       aggggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCAc                                                                                                                                         >  2:633695‑M1/136‑143 (MQ=255)
        gaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACt                                                                                                                                        >  1:95167‑M1/135‑143 (MQ=255)
          aaacgccgtaccgTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATATTCAATGAAGGGTGTCTTCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagact                                                                                                                                      <  1:713178‑M1/137‑8 (MQ=255)
           aaTGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactg                                                                                                                                     <  1:310418‑M1/143‑9 (MQ=255)
            aTGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagagtgg                                                                                                                                    >  1:227609‑M1/1‑134 (MQ=255)
             tGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTTGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggc                                                                                                                                   <  1:280514‑M1/143‑11 (MQ=255)
              gTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGACGCTTTACGGTGTAAgtaaactgccc                                                                                                                                  >  2:699525‑M1/1‑132 (MQ=255)
               tcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGa                                                                                                                                 >  1:771941‑M1/128‑143 (MQ=255)
                cGTGCCGTAATTTGCCAGCTGCTGAGAGATGCTTATTGGTGCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATGAATTGTGTCTGCTCCTTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggcccc                                                                                                                                <  2:599943‑M1/143‑14 (MQ=255)
                 gagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggtgaagtgataacagatgtgtggaaatataggggcgaatccaGTAACCACTCATTCGACt                                                                                                                               <  1:339436‑M1/18‑1 (MQ=255)
                  tACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccct                                                                                                                              >  1:572116‑M1/1‑128 (MQ=255)
                         taacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgttatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCGCTCATTCGACTGTAGGCAc                                                                                                                       <  1:473465‑M1/26‑1 (MQ=255)
                          aacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaggtataggggcaaatccaGCAACCACTCATTCGACTGTAGGCACt                                                                                                                      <  2:838352‑M1/27‑1 (MQ=255)
                             ccAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccaga                                                                                                                   >  2:278414‑M1/1‑117 (MQ=255)
                                  gcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcgagtccaGTAACCACTCATTCGACTGTAGGGACTGTCGGATa                                                                                                              <  1:704919‑M1/35‑1 (MQ=255)
                                   cgtccgtctagggcgatgcgttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgtgttacgtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATaa                                                                                                             >  2:673837‑M1/108‑143 (MQ=255)
                                   catccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATaa                                                                                                             <  2:628591‑M1/36‑1 (MQ=255)
                                   catccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaagataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGgatca                                                                                                             <  1:540675‑M1/36‑3 (MQ=255)
                                    atccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAg                                                                                                            <  1:599005‑M1/37‑1 (MQ=255)
                                     ctgAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaat                                                                                                           <  1:732959‑M1/143‑35 (MQ=255)
                                          agaTGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcac                                                                                                      <  1:466939‑M1/143‑40 (MQ=255)
                                             gtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATaaaaa                                                                                                   >  2:505185‑M1/98‑143 (MQ=255)
                                                cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCt                                                                                                <  1:122325‑M1/49‑1 (MQ=255)
                                                 gctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagttataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGCTAAGTTATAACAACCtt                                                                                               <  2:343471‑M1/50‑1 (MQ=255)
                                                        tCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgata                                                                                        >  2:335916‑M1/1‑90 (MQ=255)
                                                         ccTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatag                                                                                       <  1:218604‑M1/143‑55 (MQ=255)
                                                          tcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggacatataggggcaaatccaGTAACCACTCATTCGACTGTAAGCACTGTCGGATAAACTCTAAAAACCGTACGTAGAAt                                                                                      <  2:214739‑M1/59‑1 (MQ=255)
                                                          cTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagt                                                                                      >  2:756281‑M1/1‑88 (MQ=255)
                                                           tGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagccaaccaatagcccttaaataagtgataatc                                                                                     >  1:810514‑M1/1‑87 (MQ=255)
                                                              ccACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgataatctta                                                                                  >  1:833531‑M1/1‑84 (MQ=255)
                                                                    ttACTGAAGAACAGATTAAAATAATAAATCAATTGTGTCTGCTCATTGGTGTCCCCGGTAGGGGGCTTGACGCTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatacta                                                                            <  2:328579‑M1/143‑66 (MQ=255)
                                                                     tACTGTAGAACAGATTAAAATAATGAATAAATTGTGTCTGCTCATTGGTGACTCCGGTAGGAGGCTTGACGGTGGAAgtagactggccccctgaatctccagacaaccaatatcactcaaataagtgatagtcttaatcctag                                                                           >  1:578435‑M1/1‑77 (MQ=255)
                                                                     tACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgactctccagacaaccaatatcacttaaataagtgatagtcttaataccag                                                                           >  1:862905‑M1/1‑77 (MQ=255)
                                                                     tACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactag                                                                           <  2:274584‑M1/143‑67 (MQ=255)
                                                                        tgcagacCAGATTAAAACAAGCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttt                                                                        <  1:802541‑M1/140‑70 (MQ=255)
                                                                        tGTAGAACAGATTAAAATAATCAATACATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTACgtagactggccccctgaatctccagacaaccaatatcacgtaagtaagtgatagtcttactactagttt                                                                        >  2:836917‑M1/1‑74 (MQ=255)
                                                                        tGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagatt                                                                        >  2:447274‑M1/1‑74 (MQ=255)
                                                                         gTACAACAGATTACAATAATCAATAAATTGTGTGTGCTCATTTGTGTCTGCGGTAGGAGGCTTGACGGTGTAAgtagactggacccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt                                                                       <  2:888044‑M1/143‑71 (MQ=255)
                                                                           aGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttta                                                                     <  1:783586‑M1/143‑73 (MQ=255)
                                                                           aGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttta                                                                     <  1:787454‑M1/143‑73 (MQ=255)
                                                                             ctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTg                                                                   <  2:325617‑M1/78‑1 (MQ=255)
                                                                             aaCAGATTACAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttaga                                                                   <  2:738538‑M1/143‑75 (MQ=255)
                                                                              tgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTAGACTGTAGGCACTGTCGGATAAGTTATAAAAAACTTGCGAAGAATAGCAATATCCTGCGAACTgg                                                                  <  2:25750‑M1/79‑1 (MQ=255)
                                                                              aCAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatcatagtttttagac                                                                  >  2:133730‑M1/1‑68 (MQ=255)
                                                                               gcggcagcgggcgtgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGa                                                                 >  1:805606‑M1/64‑143 (MQ=255)
                                                                                cggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGat                                                                <  1:313923‑M1/81‑1 (MQ=255)
                                                                                aGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagacta                                                                <  2:71800‑M1/143‑78 (MQ=255)
                                                                                  aTTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagt                                                              >  1:450945‑M1/1‑64 (MQ=255)
                                                                                   cagcgggcttgtaatgggttaagtgataacagatggctggaaatatgggggcaaatcaaGTAACCACTCATTCGACTGTAGGAACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATAtt                                                             >  1:492398‑M1/60‑143 (MQ=255)
                                                                                    agcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGAGAAGTTATAAAAACCTTGCGTCGGGCAGCGAAATCCTGCGACCTGGATATTg                                                            <  2:397654‑M1/85‑1 (MQ=255)
                                                                                     gcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTgg                                                           >  2:79144‑M1/58‑143 (MQ=255)
                                                                                      aaaTAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacagccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcatt                                                          >  1:520461‑M1/1‑60 (MQ=255)
                                                                                       gggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGCCCTGGATATTGGtt                                                         <  2:578306‑M1/88‑1 (MQ=255)
                                                                                       gggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGtt                                                         <  1:240665‑M1/88‑1 (MQ=255)
                                                                                        ggcttgtaatgggttaagggataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTc                                                        >  1:527045‑M1/55‑143 (MQ=255)
                                                                                          attataatgtgttaagtgataactggtgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATATGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCca                                                      >  2:587675‑M1/53‑143 (MQ=255)
                                                                                           atCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggaga                                                     <  1:278414‑M1/143‑89 (MQ=255)
                                                                                            tCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaa                                                    <  1:159473‑M1/143‑90 (MQ=255)
                                                                                             gtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCacaa                                                   >  1:515971‑M1/50‑143 (MQ=255)
                                                                                             cAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaac                                                   <  1:756281‑M1/143‑91 (MQ=255)
                                                                                              taatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATGCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCacaac                                                  >  1:408299‑M1/49‑143 (MQ=255)
                                                                                                   aTTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagctga                                             >  1:700089‑M1/1‑47 (MQ=255)
                                                                                                    gttaagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGttt                                            <  1:745545‑M1/101‑1 (MQ=255)
                                                                                                     ggggtcggCTCAGTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatt                                           <  1:149434‑M1/140‑99 (MQ=255)
                                                                                                       aagtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTAtt                                         <  1:679072‑M1/104‑1 (MQ=255)
                                                                                                        agtgataacagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATtg                                        >  1:706129‑M1/39‑143 (MQ=255)
                                                                                                             cTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctt                                   >  1:828634‑M1/1‑37 (MQ=255)
                                                                                                                cagatgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATTGCTGCACtt                                <  2:764578‑M1/113‑1 (MQ=255)
                                                                                                                   atgtctggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATTGCTGCACttgtt                             >  1:237414‑M1/28‑143 (MQ=255)
                                                                                                                    gtgtCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacataaataagtgatagtctgaatactagtttttagactagtcattggagaacagatgattgaggtcgtagagccg                            >  2:263285‑M1/1‑30 (MQ=255)
                                                                                                                    gggccgccggtaggAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaatcagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccg                            <  1:350945‑M1/137‑114 (MQ=255)
                                                                                                                     tgtCTCCGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccgg                           <  1:824257‑M1/143‑115 (MQ=255)
                                                                                                                      gcctccgGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaaactccagacaaccaatatcacttaaagaagtgatagtcttaattctagtttttagactagtcattggagaacagatgattgatgtcttagggccgga                          <  1:326605‑M1/141‑116 (MQ=255)
                                                                                                                      gacaccagtaggaggAATGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccgga                          <  1:279878‑M1/136‑116 (MQ=255)
                                                                                                                        tggaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATTGCTGCACTTGTTGAaga                        <  2:899844‑M1/121‑1 (MQ=255)
                                                                                                                          gaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCTCAACAAGTTTATTGCTGCACTTGTTGAagaga                      >  2:478235‑M1/21‑143 (MQ=255)
                                                                                                                          gaaatataggggcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATTGCTGCACTTGTTGAagaga                      >  1:838352‑M1/21‑143 (MQ=255)
                                                                                                                          ccGGTAGGAGGCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaa                      <  2:612233‑M1/143‑120 (MQ=255)
                                                                                                                           cGGTAGGAGTCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagttatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaac                     <  2:479910‑M1/143‑121 (MQ=255)
                                                                                                                                 gaggCTTGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagac               >  2:12091‑M1/1‑17 (MQ=255)
                                                                                                                                     gcaaatccaGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCaaa           >  1:494981‑M1/10‑143 (MQ=255)
                                                                                                                                      ttGACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagttttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggggaaacgcagacgacgt          >  1:317084‑M1/1‑12 (MQ=255)
                                                                                                                                      caaatccaGTAACCACTCATTCGACCGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATATCGTTATCCTGCGACCTGGATATTGGTTCAACAACAAGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCaaaa          >  1:151758‑M1/9‑143 (MQ=255)
                                                                                                                                        tccgatgtaagtagactgtccccgtttatccccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaccagatgattgatgtcttagggcctgagaaacgcagacggcgtac        <  2:324968‑M1/138‑134 (MQ=255)
                                                                                                                                        gACGGTGTAAgtagactggccccctgaatctccagacaaccaatatcacctaactcagtgatagtcttaatactagtctttagactactcatagaaatacagatgactgatgtcttagggccggacaaacgcagacagcgtac        >  2:546103‑M1/1‑10 (MQ=255)
                                                                                                                                        aatcacgtAACCACGCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAAGCTGGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTGCCACAACAAGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAAc        <  2:749943/137‑1 (MQ=255)
                                                                                                                                            caGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACAttt    >  1:391621‑M1/3‑143 (MQ=255)
                                                                                                                                            caGGAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACAttt    >  1:368589‑M1/3‑143 (MQ=255)
                                                                                                                                             tgtAAgtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacac   >  2:26890‑M1/1‑5 (MQ=255)
                                                                                                                                             tgtAAgtagactggcacactgaatctccagacaagcaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacac   <  1:634173‑M1/143‑139 (MQ=255)
                                                                                                                                              gtAAgtagactggccccctgaatctccagacaaccaacatcacgtaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggctggagaaacgcagacggcgtaccacaca  <  2:622223‑M1/143‑140 (MQ=255)
                                                                                                                                              |                                                                                                                                              
TGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCACTCATTCGACTGTAGGCACTGTCGGATAAGTTATAAAAACCTTGCGTAGAATAGCGATATCCTGCGACCTGGATATTGGTTCCACAACAAGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTA  >  NC_000913/1589848‑1590132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.