| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 4,049,922 | IS5 (–) +4 bp | noncoding (24‑27/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3652036 = | NA (NA) | 66 (1.290) | 53/284 | 0.0 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4049925 | 0 (0.000) | noncoding (27/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 59 (1.160) | 50/284 | 0.1 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 4049922 = | 0 (0.000) | noncoding (24/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent | |||||
TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCGG > NC_000913/3653096‑3653369 | tctcTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGa > 2:667782/1‑143 (MQ=31) tctTTTCGGGTCTCACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGCTGAACCCTGTTCTATGGCTCCAGATCACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGaca < 2:50037/143‑1 (MQ=255) tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTa > 1:399203/1‑143 (MQ=34) tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACGTGTTCGCACCTTCCTTAGGTGACTCTa > 1:606816/1‑143 (MQ=17) ggTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑ttttt < 2:701291/143‑1 (MQ=39) tCTGTCGTCGCTTTCTGCTGAATTCTCTGTCGGCGACCGTGGGTTGGTGACTCATGATGAGCCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑ttttttt < 1:77299/143‑1 (MQ=14) tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGCCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGGGGACACTA‑TTTTTTTAc > 2:891787/1‑143 (MQ=255) tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTCGGTGACACTA‑TTTTTTTAc > 1:234712/1‑143 (MQ=255) aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACAt > 2:74922/1‑143 (MQ=255) gcctttACGGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGTCTCTTGATGAACCCTGTTCTATGGCTCCAGATGACTTACTTTATCTCATATCAGGGACTTGTTGGTATCTTCTTTAGGTGACACTA‑TTTTTTTACATaaa < 2:73850/139‑1 (MQ=14) cgcTTACTGCTGAAGTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAg < 2:150638/143‑1 (MQ=255) ctgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACAcc < 1:243164/143‑1 (MQ=255) tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACAccc > 2:18827/1‑143 (MQ=255) tgctgAATTCACTGTCGGAGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAACTTCCTTAGGTGACACTA‑TTTTTTTGCATAAAGAACAgcc > 1:189047/1‑143 (MQ=255) tgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAc < 1:74922/143‑1 (MQ=255) tgAATTCACTGTCGGCGAAGGGAAGTTAATAACTCATGATGTACCCTGTTCTATGGCTCCAGATGACCAACATGATCTCATATCAGGGGCTTGTCCGCCCCTTCCTTAGGTGACACTA‑GCTGTTTACACAAAGAACACCCTag > 2:652894/1‑142 (MQ=14) aTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAcccc > 1:230916/1‑143 (MQ=255) aCTGTCGGCGAAGGTACGTTCATGACTCATGATGAACCCTGTTCTACGGCTCCAGATGACAAACATGATCTCATATCAGGCACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCaaa < 1:682216/143‑1 (MQ=255) tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAAtt > 1:602898/1‑143 (MQ=255) tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCCAAttgt > 1:27469/1‑141 (MQ=255) gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGAGACTA‑TCTGTTGACAGAAAGAACACCCTACCCCCAAATtatata > 1:618672/1‑143 (MQ=17) gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAACGGACCCCCTTCCCCCACATtttata > 2:671434/1‑143 (MQ=17) gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATtatata > 1:579458/1‑143 (MQ=255) gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTATTACATAAAGAACCCCCTACCCCCAACTtatata > 2:859069/1‑143 (MQ=255) gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATg < 2:350430/143‑1 (MQ=255) tAAGTTGATGACTCATGATGAGCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATgg > 1:28994/1‑143 (MQ=255) tgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAat < 1:683273/143‑1 (MQ=255) aCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCtt < 2:386957/143‑1 (MQ=255) tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGa > 1:256948/1‑143 (MQ=255) atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGaca > 1:321199/1‑143 (MQ=255) gatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaa < 2:92403/143‑1 (MQ=255) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATCAAGATCGACAACATCCTGacaaaca > 2:57290/1‑143 (MQ=255) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATCCAGATGGACAATATCTTGACAAACAAATc > 1:455412/1‑143 (MQ=255) ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTTACATAAAGAACACCCTACCCCTAAATTATATAAAGATGGACAATATCTTAAtaaacaaaac > 2:67968/1‑141 (MQ=25) tATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGttt < 2:798378/143‑1 (MQ=255) aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTa > 1:215543/1‑143 (MQ=255) cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACTCCCAAATTATATAAAGATGTACAATATCTTGACAAACAAATCGAAGGTTTAtttt > 2:664418/1‑143 (MQ=255) cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCACATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAtttt < 2:258276/143‑1 (MQ=255) cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa > 2:782771/1‑143 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGAAGCACAAAATCTTGTCAGACAAATCGAAGGTTTATTTTCAACatt > 1:618360/1‑143 (MQ=38) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACCttatta > 1:736299/1‑143 (MQ=255) aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCa > 2:852638/1‑143 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTa < 2:28994/143‑1 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAACTTATATAAAGATGGACAATATCTTGACACACAAATCGAAGGTTTATTTTCAACATTATTAACCACTAATg > 2:634153/1‑143 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATg > 1:762478/1‑143 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCAAAAATTATAAAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGAc > 1:448099/1‑143 (MQ=255) aaacgaGGGACTTGTTCGCACCTTCCTTAGGTGACACGA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGAc < 1:560588/138‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAc > 2:134866/1‑143 (MQ=255) ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTTTTTTTTTTTCACCCTACACCCAACTTATATAAAGCTGGACAATATCTTGACAACCAAATCGAAGGTTTCTTTTCAACATTATTCTCCATCCATCACAACCttc > 2:802858/1‑142 (MQ=255) cTTGTTCGCAGCTTCCTGAGGTGTCACTA‑TTTGTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGAGGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTAc < 2:53321/143‑1 (MQ=255) ttGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACg > 1:829206/1‑143 (MQ=255) ttCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTGCGACAGTATTAACCATTAATGACAACCTTTTACGAGc > 1:618378/1‑143 (MQ=255) ttCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAATTTTATTTTCAACATTCTTAACCATTAGTGACAACCTTTTTCGAGc > 2:191191/1‑143 (MQ=255) gcagcgtccttAGGTGAGACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCaaa < 1:190462/137‑1 (MQ=255) gCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGCGCaag > 1:54042/1‑142 (MQ=255) gCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCaaa > 1:104721/1‑143 (MQ=255) accgcccttAGGTGATACTC‑TTTTCTTACCGAAAGAACACCCTACCCCCAAATTATATCAAGATGGACAATATCTTGACACACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAg < 2:827140/138‑1 (MQ=255) ttccttAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCgg > 1:679669/1‑143 (MQ=255) | TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCGG > NC_000913/3653096‑3653369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |