| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3740482 = | 37 (0.970) | 3 (0.080) | 3/266 | 5.2 | 7.9% | coding (778/1254 nt) | avtA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase |
| ? | NC_000913 | 3740571 = | 35 (0.980) | coding (867/1254 nt) | avtA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATTCCGCTGGTGATTGATAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAA > NC_000913/3740340‑3740614 | cATTCCGCTGGTGATTGATAACGCTTATGTCGTCCCGTTCCCTTGTTTCATCTTCAGTGAAGCGCGCCCGCCACGGAAGCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTa < 1:268023/143‑1 (MQ=255) gTGATTGATAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCCTTCCAAGCTGGGTCTACATGGCTCCCGCTGCGGCATTATCATCGCCaa > 2:16382/1‑143 (MQ=255) gattgatAACGCTTTTGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATg < 1:588641/143‑1 (MQ=255) gattgatAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCTGCATTATCATCGCCAATg > 1:632119/1‑143 (MQ=255) gatAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCACGCTGGGTCTACCTTGCACCCGCTGCGGCATTCTCATCGCCAATGaaaa > 1:686895/1‑143 (MQ=255) ctcgcGCTTCTGGCTCTCCGTTCCCGGGTATCATCTTCAGGGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGaaaaa < 2:554609/139‑1 (MQ=255) atAACGCTTATGGCGCCCCGCTCCCGGGTATCATCTTCAGCGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGaaaaa < 1:434715/143‑1 (MQ=255) gCTTATGGCGTCCCGTTCTCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGCGCATGAGTCTTTCCAAGCTGGGTCTACCTGACTCCCGCTGCGGCATTATCATCGCCAATGAAAAAatcat < 2:127032/143‑1 (MQ=255) ttATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGCATATCGTGCTGTGCATGAGTCTTTCCATGCTGGGTCTACCTTGCTACCGCTGCGGCATTATCATAGTAAATGAAAAaataataa > 1:107337/1‑141 (MQ=255) tCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCCATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATc < 1:328597/143‑1 (MQ=255) ttCCCGGGTATCATCTTCAGTGAAGCGCGCTCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCaa < 1:418915/143‑1 (MQ=255) tcgcGGGTATCATCTCCGGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAat < 2:681202/140‑1 (MQ=255) tcatcTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCCCTGCGGCATTATCATCGCCCATGAAAAAATCACCACCGCCATCACCAATATGAACGGc > 2:687158/1‑143 (MQ=255) catgTTTAGTGAAGCGAGCCCGCTATGGAATCCGAATATCGTGCTGTGCATTATTCTTTCTAAGCTTTGTTTACCTGGCTCCCGATGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCa < 1:157627/143‑1 (MQ=255) cAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATTATCACCGCCATCACCAATATGAACGGCAATAACa > 1:377962/1‑143 (MQ=255) gTGAATCGCGTCCGCTATGGAATACCAATATCGTGCAGTGCATGCGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCCGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGc < 1:421532/143‑1 (MQ=255) gAAGCCCGCCCGCTATGGAATCTGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCt < 1:680983/143‑1 (MQ=255) gcgctcCTGCCATGATATCAGAGTGTCGTGCTCTGCCTCGGGCTGTCTAAGCTGGGTCTACCTGGCTCCCGCGGCGGCATTATCATCGCCAATGAAATAATCATCACCGCCTTCTCCGTTATGAACGGCATTATCAGCCTGGc < 2:481784/143‑1 (MQ=255) cGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGCGTCTACCTGGCTCCCTCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCg < 2:686018/143‑1 (MQ=255) gTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCgatgat < 2:471498/143‑1 (MQ=255) tgtgCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGAACCGGGCGGGCTCGGTCCGACGATGAagtgt > 2:326720/1‑143 (MQ=255) gCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCAGCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGaa < 1:425025/143‑1 (MQ=255) gTCTATCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCCGGCGGTATTGGTCCGGCGATGATGTGTGAAATGAtt < 1:467271/143‑1 (MQ=255) tCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGCAGTGTGAAATgcaca > 2:389749/1‑139 (MQ=255) cTTTCCTCGTTGGGTCTACCTGGCTCCCGCTGCGGCGTTATCATCGCCAATGAAAAAATCATCACCGCCCGCGCCAATTTGATCGGCATTATCAGCCGGGCACCTGGCGGTATTGGTCCGGTGATGATGTGTGACATGATTaa < 2:260160/143‑1 (MQ=255) tttCCAAGCTGGGTCTACCTGGCTCCCGCTGCTGCATTTTCATCTCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAg < 1:16382/143‑1 (MQ=255) ttCCAATCTGGGTCTACCTGGCTCCCGCTGCGGCGTTATCATCGCCAATGAAAATATCATCACCGCCATCACTAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGc < 2:299227/143‑1 (MQ=255) tCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGCGTGAAATGATTAAGCg > 2:711192/1‑143 (MQ=255) aGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAAAATGAACGGCATTATCAGCCTGGCACCTGGCGGTCGTCGTCCGGCGCCGGCGTGTGGTCTGATTAAGCGTaaa > 1:20749/1‑142 (MQ=255) tctgttgcTACCGTGCTCATGCTGTGTCATTATCATCGGCAATCAAAAAATCATCACCGCCATCTCCAATATTAACTGCATTATTATCCTGGCACTTTGCGGTATTGGTCCGGCTATGATGTGTGAAATGATTAAGCGTAACg < 2:96486/136‑1 (MQ=255) ccaCCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATACGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATctgct < 1:508465/141‑1 (MQ=255) ctttcTCCCGCTGCGGCTTTCTCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCTGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTgcgc < 2:335859/139‑1 (MQ=255) cTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGCCAACAGGAGGAATTGGAAAGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTgcgc > 1:434368/1‑143 (MQ=255) gCTCCCGCTGCGGCATTATCATCGCCAAAGAAAAAATCCTCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTACCGGAATTGGTCCGGCGATGAGGAGTGAAATGATTAAGCGTAACGACccgctccacatg > 2:218628/1‑136 (MQ=255) gCTGCGGCATTATCATCGCCAATGAAAAAATCATCCCCGCCATCACCAATATGACCGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaa > 2:99018/1‑143 (MQ=255) gCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGGACGGCATTATCAGCCTGGCATCTGGCGGTATTGGTACGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaa > 1:553107/1‑143 (MQ=255) cTGCGGCAGTATCATGGCCAATGAAAATATCATCTCCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaaa < 2:248298/143‑1 (MQ=255) | CATTCCGCTGGTGATTGATAACGCTTATGGCGTCCCGTTCCCGGGTATCATCTTCAGTGAAGCGCGCCCGCTATGGAATCCGAATATCGTGCTGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAA > NC_000913/3740340‑3740614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |