New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3740482 =37 (0.970)3 (0.080) 3/266 5.2 7.9% coding (778/1254 nt) avtA valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
?NC_000913 3740571 = 35 (0.980)coding (867/1254 nt) avtA valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGCCTGATTCATAAACCGGAA  >  NC_000913/3740432‑3740712
                                                                                                                                           |                                                                                                                                             
tgtgCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGAACCGGGCGGGCTCGGTCCGACGATGAagtgt                                                                                                                                            >  2:326720/1‑143 (MQ=255)
   gCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCAGCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGaa                                                                                                                                         <  1:425025/143‑1 (MQ=255)
         gTCTATCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCCGGCGGTATTGGTCCGGCGATGATGTGTGAAATGAtt                                                                                                                                   <  1:467271/143‑1 (MQ=255)
          tCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGCAGTGTGAAATgcaca                                                                                                                                  >  2:389749/1‑139 (MQ=255)
           cTTTCCTCGTTGGGTCTACCTGGCTCCCGCTGCGGCGTTATCATCGCCAATGAAAAAATCATCACCGCCCGCGCCAATTTGATCGGCATTATCAGCCGGGCACCTGGCGGTATTGGTCCGGTGATGATGTGTGACATGATTaa                                                                                                                                 <  2:260160/143‑1 (MQ=255)
            tttCCAAGCTGGGTCTACCTGGCTCCCGCTGCTGCATTTTCATCTCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAg                                                                                                                                <  1:16382/143‑1 (MQ=255)
             ttCCAATCTGGGTCTACCTGGCTCCCGCTGCGGCGTTATCATCGCCAATGAAAATATCATCACCGCCATCACTAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGc                                                                                                                               <  2:299227/143‑1 (MQ=255)
              tCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGCGTGAAATGATTAAGCg                                                                                                                              >  2:711192/1‑143 (MQ=255)
                  aGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAAAATGAACGGCATTATCAGCCTGGCACCTGGCGGTCGTCGTCCGGCGCCGGCGTGTGGTCTGATTAAGCGTaaa                                                                                                                          >  1:20749/1‑142 (MQ=255)
                   tctgttgcTACCGTGCTCATGCTGTGTCATTATCATCGGCAATCAAAAAATCATCACCGCCATCTCCAATATTAACTGCATTATTATCCTGGCACTTTGCGGTATTGGTCCGGCTATGATGTGTGAAATGATTAAGCGTAACg                                                                                                                         <  2:96486/136‑1 (MQ=255)
                          ccaCCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATACGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATctgct                                                                                                                  <  1:508465/141‑1 (MQ=255)
                              ctttcTCCCGCTGCGGCTTTCTCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCTGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTgcgc                                                                                                              <  2:335859/139‑1 (MQ=255)
                              cTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGCCAACAGGAGGAATTGGAAAGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTgcgc                                                                                                              >  1:434368/1‑143 (MQ=255)
                                 gCTCCCGCTGCGGCATTATCATCGCCAAAGAAAAAATCCTCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTACCGGAATTGGTCCGGCGATGAGGAGTGAAATGATTAAGCGTAACGACccgctccacatg                                                                                                           >  2:218628/1‑136 (MQ=255)
                                       gCTGCGGCATTATCATCGCCAATGAAAAAATCATCCCCGCCATCACCAATATGACCGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaa                                                                                                     >  2:99018/1‑143 (MQ=255)
                                       gCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGGACGGCATTATCAGCCTGGCATCTGGCGGTATTGGTACGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaa                                                                                                     >  1:553107/1‑143 (MQ=255)
                                        cTGCGGCAGTATCATGGCCAATGAAAATATCATCTCCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGaaa                                                                                                    <  2:248298/143‑1 (MQ=255)
                                                            aTGAACAAATCATCACCGCCATCACCAAGATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTtac                                                                                <  2:613921/143‑1 (MQ=255)
                                                            aTGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTCCGCCTGTCTGAAACAGTCATCAAACCTtttttc                                                                                >  1:709777/1‑141 (MQ=255)
                                                               ataaatTCATCTCCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTtactac                                                                             <  1:101376/141‑1 (MQ=255)
                                                                aaaaaTCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTCGTCCGGCGCTGCTGTGTTAAATAATTAAGCGTAACGATCTGCTGCGACTGTATGAAACAATCCTAAAACCGTTTTACTAcc                                                                            >  1:567115/1‑143 (MQ=255)
                                                                 aaaaTCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTAGTCCGGCGGTGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCa                                                                           >  2:517157/1‑143 (MQ=255)
                                                                       atcaCCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTACGGCGATGATGTGTGCAATGATTAAGCGTAACGATCTGATGCGCCTGTCTGAAACAGTCATCAAACTGTGTTGCTACCAGCgtat                                                                     >  2:134256/1‑141 (MQ=255)
                                                                          cgcGCCATCGCCGATATGAGCGTCATTATCAGTCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCa                                                                  <  2:444310/141‑1 (MQ=255)
                                                                            cGCCATCTCCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAgg                                                                <  2:632119/143‑1 (MQ=255)
                                                                              gcagcACCAGTTTGAACGGCATTGTCGGCCGGGCATCTGGCGGTATTGGTCCGGGGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGaa                                                              <  1:720904/139‑1 (MQ=255)
                                                                                   aCCAATATGAACGGCATTATCAGCCTGGCACATGGCGGTAGTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGACACCAAACCGTTTTACGACCAGAGCGATCAGCAAAcgaa                                                         >  2:617809/1‑140 (MQ=255)
                                                                                             aCGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCACACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCAtt                                               <  2:686895/143‑1 (MQ=255)
                                                                                                 cATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGCAAACTATCGCCATCATTcgcc                                           >  2:687043/1‑143 (MQ=255)
                                                                                                        aGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTAttt                                    >  2:366024/1‑143 (MQ=255)
                                                                                                                        gTATTGGTCTGTCGATGATGTGTTAAATGATTAATCGTAACGTTCTGCTGCGCCTGTCTGAAACAGTCATCCAACCGGTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGc                    <  1:370572/143‑1 (MQ=255)
                                                                                                                         ttttGGTGCGGCGATGGTGTGTGAAATGATTAATCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGcc                   <  2:491019/141‑1 (MQ=255)
                                                                                                                           ttGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGCCTg                 >  1:474006/1‑143 (MQ=255)
                                                                                                                              ttCCGGAGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTTGCCGCTATTTACCGGAAAATCGCTGCCTGAtt              <  2:507082/142‑1 (MQ=255)
                                                                                                                              gTCCGGCGATGATGTGTGAAATAATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCAGCTATTTACCGGAAAATCGCTgacagctt              >  2:322527/1‑136 (MQ=255)
                                                                                                                                    cGATAATGTGTGAAATGATTAAGCGTAACGATCAGCGTCGCCGGTCTGAAACAGTCATCAAAAAGTTTTACTACCAGAGGATTCAAGAGACGATAGACATCATTCCCCACGATGTACCGGACAATGGCTGCAGGATTAACaaa        >  2:31122/1‑143 (MQ=255)
                                                                                                                                          tgtgtgAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGCCTGATTCATAAACCGGaa  <  1:215139/143‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                             
TGTGCATGAGTCTTTCCAAGCTGGGTCTACCTGGCTCCCGCTGCGGCATTATCATCGCCAATGAAAAAATCATCACCGCCATCACCAATATGAACGGCATTATCAGCCTGGCACCTGGCGGTATTGGTCCGGCGATGATGTGTGAAATGATTAAGCGTAACGATCTGCTGCGCCTGTCTGAAACAGTCATCAAACCGTTTTACTACCAGCGTGTTCAGGAAACTATCGCCATCATTCGCCGCTATTTACCGGAAAATCGCTGCCTGATTCATAAACCGGAA  >  NC_000913/3740432‑3740712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.