| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,619,080 | Δ35 bp | intergenic (‑172/‑6) | marC ← / → marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1619080 | 1619114 | 35 | 49 [0] | [1] 50 | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1619079 | 0 (0.000) | 46 (1.250) | 43/272 | 0.0 | 98.9% | intergenic (‑171/‑41) | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| ? | NC_000913 | 1619115 = | 1 (0.030) | intergenic (‑207/‑5) | marC/marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance | |||||
ACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGT > NC_000913/1618978‑1619253 | cgaaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgcgcaaCTAAtg > 2:632523‑M2/138‑143 (MQ=255) gaaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaatcttgaaccgatttagcaaaacatagcaacagacaattcattaatttgacttatacttgcctgggcaaCTAAtgt > 1:20732‑M2/137‑143 (MQ=255) gaaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAAtgt < 2:716689‑M2/7‑1 (MQ=255) aaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttccctgggcaaCTAAtgtg > 2:30011‑M2/136‑143 (MQ=255) gtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGaaaa < 1:374332‑M2/12‑1 (MQ=255) ataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcacttcattcatttgacttttacttgcctgggcaaCTAATGTGAAAAGt > 1:43697‑M2/130‑143 (MQ=255) taaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTa > 2:140874‑M2/129‑143 (MQ=255) gggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcctttgacttatacttgcctggccaaCACATGTGCAAAgtacaaa > 1:114271‑M2/125‑140 (MQ=255) acaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCt < 2:256702‑M2/25‑1 (MQ=255) gataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCa > 2:419794‑M2/114‑143 (MQ=255) taatgtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgagatagcaaaacgtggcatcgggcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAAt < 1:84585‑M2/32‑1 (MQ=255) aaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgctttcgcaaaacgtcgcatcgttcaattcattcatttgacttatacatacctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATg > 1:147488‑M2/111‑143 (MQ=255) tgtgtctctctttagttagccttgcatcgcattgaataaaacttgaaccgatttagcaaaacgtggcatcggtcaatgcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGaa < 1:240399‑M2/35‑1 (MQ=255) gtgtcactctttagctagccttgcatcgcattgaacaaaactttaaccgatttagcaaaacgtggcatcggttaattcattcatttgacttatactttcttgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGaaa < 2:634659‑M2/36‑1 (MQ=255) actctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTACTGTGAAATGTACCAGCGATCTGTTCAATGAAattatt > 1:144589‑M2/103‑143 (MQ=255) ctctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTc < 2:588057‑M2/42‑1 (MQ=255) ctttagctagccttgcatcgcattgaacaaaacttgaacggatttaggaaaacgtggcatcggtcaattcattcatttgacttatacttgactgggcaaCGAATGTGAAAAATACCAGCGATCTGTTCAATAAGATTATTACa > 2:494653‑M2/100‑143 (MQ=255) ttgcatcgcattgaacaaaacttgaaacgatttagcaaaacgtagcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCCATGAAATAATCCCATtgggtccccta > 2:121233‑M2/88‑138 (MQ=255) tcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAGCAGTACCAGCGATCTGTTCAATAAAATTATTCAATTGGATCACTTAATACa > 1:209000‑M2/83‑143 (MQ=255) gcattgaaacaacctttaaccgtttgagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCata < 2:144589‑M2/63‑1 (MQ=255) attgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgactgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATg < 1:392644‑M2/65‑1 (MQ=255) aacaatacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTa < 2:409200‑M2/69‑1 (MQ=255) caaaacttgaaccgatttagcaaaacgtggcatcggttaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAt < 1:278720‑M2/71‑1 (MQ=255) aaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCa < 1:504042‑M2/73‑1 (MQ=255) cttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCagaa < 2:52120‑M2/76‑1 (MQ=255) ttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATaagaag > 1:313618‑M2/67‑143 (MQ=255) gaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGACAAGTACCAGCGATCTGTTCAATGACATTATTACATTGGATCGAGTAATCCATATGGTTAATCAgaagaa > 1:563863‑M2/65‑143 (MQ=255) tatttggcaaatcgtggcttgggtcatttccttcttttgacttataatgggctgggcaaCTAATGTGAAAAGTACCAGCGATCTTTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATc < 1:601611‑M2/84‑1 (MQ=255) atttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCata > 1:257879‑M2/59‑121 (MQ=255) atttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCata < 2:257879‑M2/63‑1 (MQ=255) agcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTg < 1:140874‑M2/89‑1 (MQ=255) catcggtcaattcattcatttgtcttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTAt < 1:423011‑M2/101‑1 (MQ=255) atcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCCGCGATCTGTTCACTGAAATTATTCAATAGGGTCGCTTAATCAAAATGATTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATc > 1:4207‑M2/42‑143 (MQ=255) tcggtcaattcattaatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCt < 2:259973‑M2/103‑1 (MQ=255) cggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGATAGATCGCCTGctaaacgaaaaaaga > 1:218913‑M2/40‑136 (MQ=255) tcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGTAGCAAGATCGCCTGGTTCACGAGTAtctgtctcgtct > 1:701560‑M2/32‑139 (MQ=255) cttcacttgacttatactgccctggtcaaCTCATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTATTCCATATGGTTAATCAGAAGAAATATCGCCTGCTTAACGAGTATCTGTCTCCGCTgg < 2:168353‑M2/114‑1 (MQ=255) tgagttatacttgcctggtcaaCTAATGTGAAAAGTACGAGCGGTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTAc < 1:501646‑M2/121‑1 (MQ=255) gacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCAGCTGGATATTAcc > 1:464559‑M2/22‑143 (MQ=255) ttatacttgcctgagcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATACCATTGGGTCGCTTAATCCATATAGTTAATCAGAAGAAAGATCGCCTGATTAACGAGTATCTATCTCATCTAGATattacaccc > 2:145560‑M2/19‑139 (MQ=255) atacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGTTTAACTAGTATCTGTCTCCGCTggatattaaagcgac > 1:257893‑M2/17‑136 (MQ=255) atacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAACCAGAAGAAAGATCGCCTGCTTAACAAGTATCTATATCAGCTAGATATTACCGCGGc > 1:587893‑M2/17‑143 (MQ=255) ttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGCACGCTCGCCTGCTTAACGAGTATCTATCTCAAATGAATATTACAGAGgaacaa > 1:503408‑M2/13‑142 (MQ=255) ttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAACGATCGCGTGCTTAACGAGAATCAGACACAGATGAATATTACCAAAGCACAg > 1:36215‑M2/13‑143 (MQ=255) ttGCCTGTGCAACTCATCTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCAAATGCTTAATCAGAAGCAAGATCGACTGCTTTAAGAGTATCTGATTCCACTACATATTACAGCGGCACAg > 2:702549/1‑143 (MQ=255) ctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTa < 1:419794‑M2/135‑1 (MQ=255) tgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAGCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTaa < 1:347964‑M2/136‑1 (MQ=255) gggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCTTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAg > 1:385184‑M2/7‑143 (MQ=255) gaacaaCTAATATTAAAAGTACCAAAGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAg < 1:158448‑M2/137‑1 (MQ=255) gcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGGCGCTTAATCAATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTATCAACTGGCTATTACCGCTGCACAgcttacgtc > 2:654550‑M2/5‑139 (MQ=255) | ACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGT > NC_000913/1618978‑1619253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |