Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,619,080	Δ35 bp	intergenic (‑172/‑6)	marC ← / → marR	UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1619080	1619114	35	49 [0]	[1] 50	marC/marR	UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1619079	0 (0.000)	46 (1.250)	43/272	0.0	98.9%	intergenic (‑171/‑41)	marC/marR	UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance
	?	NC_000913	1619115 =	1 (0.030)					intergenic (‑207/‑5)	marC/marR	UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance

ACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGT  >  NC_000913/1618978‑1619253                                                                                                                                          |                                                                                                                                           cgaaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgcgcaaCTAAtg                                                                                                                                       >  2:632523‑M2/138‑143 (MQ=255)  gaaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaatcttgaaccgatttagcaaaacatagcaacagacaattcattaatttgacttatacttgcctgggcaaCTAAtgt                                                                                                                                      >  1:20732‑M2/137‑143 (MQ=255)  gaaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAAtgt                                                                                                                                      <  2:716689‑M2/7‑1 (MQ=255)   aaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttccctgggcaaCTAAtgtg                                                                                                                                     >  2:30011‑M2/136‑143 (MQ=255)       gtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGaaaa                                                                                                                                 <  1:374332‑M2/12‑1 (MQ=255)         ataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcacttcattcatttgacttttacttgcctgggcaaCTAATGTGAAAAGt                                                                                                                               >  1:43697‑M2/130‑143 (MQ=255)          taaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTa                                                                                                                              >  2:140874‑M2/129‑143 (MQ=255)              gggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcctttgacttatacttgcctggccaaCACATGTGCAAAgtacaaa                                                                                                                          >  1:114271‑M2/125‑140 (MQ=255)                    acaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCt                                                                                                                    <  2:256702‑M2/25‑1 (MQ=255)                         gataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCa                                                                                                               >  2:419794‑M2/114‑143 (MQ=255)                           taatgtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgagatagcaaaacgtggcatcgggcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAAt                                                                                                             <  1:84585‑M2/32‑1 (MQ=255)                            aaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgctttcgcaaaacgtcgcatcgttcaattcattcatttgacttatacatacctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATg                                                                                                            >  1:147488‑M2/111‑143 (MQ=255)                              tgtgtctctctttagttagccttgcatcgcattgaataaaacttgaaccgatttagcaaaacgtggcatcggtcaatgcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGaa                                                                                                          <  1:240399‑M2/35‑1 (MQ=255)                               gtgtcactctttagctagccttgcatcgcattgaacaaaactttaaccgatttagcaaaacgtggcatcggttaattcattcatttgacttatactttcttgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGaaa                                                                                                         <  2:634659‑M2/36‑1 (MQ=255)                                    actctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTACTGTGAAATGTACCAGCGATCTGTTCAATGAAattatt                                                                                                    >  1:144589‑M2/103‑143 (MQ=255)                                     ctctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTc                                                                                                   <  2:588057‑M2/42‑1 (MQ=255)                                       ctttagctagccttgcatcgcattgaacaaaacttgaacggatttaggaaaacgtggcatcggtcaattcattcatttgacttatacttgactgggcaaCGAATGTGAAAAATACCAGCGATCTGTTCAATAAGATTATTACa                                                                                                 >  2:494653‑M2/100‑143 (MQ=255)                                                   ttgcatcgcattgaacaaaacttgaaacgatttagcaaaacgtagcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCCATGAAATAATCCCATtgggtccccta                                                                                     >  2:121233‑M2/88‑138 (MQ=255)                                                        tcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAGCAGTACCAGCGATCTGTTCAATAAAATTATTCAATTGGATCACTTAATACa                                                                                >  1:209000‑M2/83‑143 (MQ=255)                                                          gcattgaaacaacctttaaccgtttgagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCata                                                                              <  2:144589‑M2/63‑1 (MQ=255)                                                            attgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgactgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATg                                                                            <  1:392644‑M2/65‑1 (MQ=255)                                                                aacaatacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTa                                                                        <  2:409200‑M2/69‑1 (MQ=255)                                                                  caaaacttgaaccgatttagcaaaacgtggcatcggttaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAt                                                                      <  1:278720‑M2/71‑1 (MQ=255)                                                                    aaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCa                                                                    <  1:504042‑M2/73‑1 (MQ=255)                                                                       cttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCagaa                                                                 <  2:52120‑M2/76‑1 (MQ=255)                                                                        ttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATaagaag                                                                >  1:313618‑M2/67‑143 (MQ=255)                                                                          gaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGACAAGTACCAGCGATCTGTTCAATGACATTATTACATTGGATCGAGTAATCCATATGGTTAATCAgaagaa                                                              >  1:563863‑M2/65‑143 (MQ=255)                                                                               tatttggcaaatcgtggcttgggtcatttccttcttttgacttataatgggctgggcaaCTAATGTGAAAAGTACCAGCGATCTTTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATc                                                         <  1:601611‑M2/84‑1 (MQ=255)                                                                                atttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCata                                                                              >  1:257879‑M2/59‑121 (MQ=255)                                                                                atttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCata                                                                              <  2:257879‑M2/63‑1 (MQ=255)                                                                                    agcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTg                                                    <  1:140874‑M2/89‑1 (MQ=255)                                                                                                catcggtcaattcattcatttgtcttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTAt                                        <  1:423011‑M2/101‑1 (MQ=255)                                                                                                 atcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCCGCGATCTGTTCACTGAAATTATTCAATAGGGTCGCTTAATCAAAATGATTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATc                                       >  1:4207‑M2/42‑143 (MQ=255)                                                                                                  tcggtcaattcattaatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCt                                      <  2:259973‑M2/103‑1 (MQ=255)                                                                                                   cggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGATAGATCGCCTGctaaacgaaaaaaga                                     >  1:218913‑M2/40‑136 (MQ=255)                                                                                                           tcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGTAGCAAGATCGCCTGGTTCACGAGTAtctgtctcgtct                             >  1:701560‑M2/32‑139 (MQ=255)                                                                                                             cttcacttgacttatactgccctggtcaaCTCATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTATTCCATATGGTTAATCAGAAGAAATATCGCCTGCTTAACGAGTATCTGTCTCCGCTgg                           <  2:168353‑M2/114‑1 (MQ=255)                                                                                                                    tgagttatacttgcctggtcaaCTAATGTGAAAAGTACGAGCGGTCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTAc                    <  1:501646‑M2/121‑1 (MQ=255)                                                                                                                     gacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCAGCTGGATATTAcc                   >  1:464559‑M2/22‑143 (MQ=255)                                                                                                                        ttatacttgcctgagcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATACCATTGGGTCGCTTAATCCATATAGTTAATCAGAAGAAAGATCGCCTGATTAACGAGTATCTATCTCATCTAGATattacaccc                >  2:145560‑M2/19‑139 (MQ=255)                                                                                                                          atacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGTTTAACTAGTATCTGTCTCCGCTggatattaaagcgac              >  1:257893‑M2/17‑136 (MQ=255)                                                                                                                          atacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAACCAGAAGAAAGATCGCCTGCTTAACAAGTATCTATATCAGCTAGATATTACCGCGGc              >  1:587893‑M2/17‑143 (MQ=255)                                                                                                                              ttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGCACGCTCGCCTGCTTAACGAGTATCTATCTCAAATGAATATTACAGAGgaacaa          >  1:503408‑M2/13‑142 (MQ=255)                                                                                                                              ttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAACGATCGCGTGCTTAACGAGAATCAGACACAGATGAATATTACCAAAGCACAg          >  1:36215‑M2/13‑143 (MQ=255)                                                                                                                              ttGCCTGTGCAACTCATCTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCAAATGCTTAATCAGAAGCAAGATCGACTGCTTTAAGAGTATCTGATTCCACTACATATTACAGCGGCACAg          >  2:702549/1‑143 (MQ=255)                                                                                                                                  ctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTa      <  1:419794‑M2/135‑1 (MQ=255)                                                                                                                                   tgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAGCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTaa     <  1:347964‑M2/136‑1 (MQ=255)                                                                                                                                    gggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCTTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAg    >  1:385184‑M2/7‑143 (MQ=255)                                                                                                                                    gaacaaCTAATATTAAAAGTACCAAAGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAg    <  1:158448‑M2/137‑1 (MQ=255)                                                                                                                                      gcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGGCGCTTAATCAATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTATCAACTGGCTATTACCGCTGCACAgcttacgtc  >  2:654550‑M2/5‑139 (MQ=255)                                                                                                                                          |                                                                                                                                           ACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGT  >  NC_000913/1618978‑1619253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑