| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1220759 | 84 (1.220) | 5 (0.080) | 5/272 | 9.2 | 5.9% | pseudogene (1159/2574 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| ? | NC_000913 | = 1220768 | 80 (1.210) | pseudogene (1168/2574 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1220612‑1220759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT < NC_000913/1220768‑1220629 tacGTTAACAAAACTACAACGAATGTAACTAAACTCAATCTAAGTATTATCACACCTGGTAATAATGTTCTCGCTAATAGTACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGTAGCGACTAAACTCGT < 1:30929/140‑1 CTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGTGGTTGTG < 1:1023101/143‑1 ggcTGTAAGTAGTCTTCATCGCAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGTGGTTGTGCCGCTGA < 1:690524/140‑1 TTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGTGGTTGTGCCGCTGACGA > 1:64503/1‑73 TTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGTGGTTGTGCCGCTGACGA < 2:64503/73‑1 agCGTCAGGGTGGTTGTGCCGCTGACGAGTTTAGTGGCTCGATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTAC < 2:1102231/141‑1 GCGTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTATATCCGTT < 1:1055539/143‑1 GCGTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT < 1:1135469/143‑1 GCGTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT < 1:770117/143‑1 GCGTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT < 1:770250/143‑1 GATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1220612‑1220759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT < NC_000913/1220768‑1220629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |