New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1220759	84 (1.220)	5 (0.080)	5/272	9.2	5.9%	pseudogene (1159/2574 nt)	ycgH	pseudogene; putative ATP‑binding component of a transport system
	?	NC_000913	= 1220768	80 (1.210)					pseudogene (1168/2574 nt)	ycgH	pseudogene; putative ATP‑binding component of a transport system
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACATTAAC  >  NC_000913/1220619‑1220901                                                                                                                                              |                                                                                                                                                 aCAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGc                                                                                                                                                >  1:949062/1‑143 (MQ=255)   aaaaCTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGcac                                                                                                                                              >  1:706952/1‑143 (MQ=255)   aaaaCTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGcac                                                                                                                                              >  1:475828/1‑143 (MQ=255)    aaaCTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGcaca                                                                                                                                             >  1:823873/1‑143 (MQ=255)           aaCGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGc                                                                                                                                      >  1:770117/1‑143 (MQ=255)           aaCGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGc                                                                                                                                      >  1:770250/1‑143 (MQ=255)           aaCGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGc                                                                                                                                      >  1:1135469/1‑143 (MQ=255)           aaCGGATATAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGc                                                                                                                                      >  1:1055539/1‑143 (MQ=255)              ggATGTAAGTATCCTTACTCGAGGTATGATCAGTCCTTGTGCT‑TTCTTTTGCTGTAATAATACCCGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGa                                                                                                                                   <  1:279551/143‑1 (MQ=255)                  gTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATCGAGCCACTAAACTCGTCAGCGGCACAACCACCCTGACGCt                                                                                                                               >  2:1102231/1‑143 (MQ=255)                     aGTATCCTTAGTCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTc                                                                                                                            <  2:1249523/143‑1 (MQ=255)                     aGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTc                                                                                                                            <  1:46570/143‑1 (MQ=255)                        aTCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGCCACAACCACGCTGAAGCTTTCAGa                                                                                                                         >  2:540757/1‑143 (MQ=255)                         tCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACCTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGaa                                                                                                                        >  2:1232282/1‑143 (MQ=255)                               aTCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGGGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACAACGCTGAAGCTTTCAGAGAAcaca                                                                                                                  >  2:872696/1‑143 (MQ=255)                                 cGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAAt                                                                                                                <  1:117092/143‑1 (MQ=255)                                   aaGTATTATCGCACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCt                                                                                                              <  2:136915/143‑1 (MQ=255)                                   aaGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTAGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCGGAAGCTATACGAAAATACAAACt                                                                                                              >  2:269573/1‑143 (MQ=255)                                       attatCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGaa                                                                                                          <  1:721436/143‑1 (MQ=255)                                           tCACACCTGGTAATAATGTTCTGAT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAAACTGGAATATg                                                                                                      >  2:1236381/1‑143 (MQ=255)                                            cacaCCTGTTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGa                                                                                                     <  2:471217/143‑1 (MQ=255)                                             acacCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGGCGTAAACATAATTTCGTCCGACTCTATACTAAATCGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTCCATAGAGGACAATCAGGAAGAGGaa                                                                                                    >  2:1222650/1‑143 (MQ=255)                                              cacCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGaaa                                                                                                   <  1:864371/143‑1 (MQ=255)                                                  tGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATg                                                                                               >  1:98040/1‑143 (MQ=255)                                                   ggTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGGGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATAAAAGCTGa                                                                                              >  2:99240/1‑143 (MQ=255)                                                   ggTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTACTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGa                                                                                              >  1:788687/1‑143 (MQ=255)                                                    ggaataatGGTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGACAGCGGCACAACCACGCTGAAGCTGTCAGAAAATACAATCTGGAATCTGAAAGATGAc                                                                                             >  2:460190/3‑143 (MQ=255)                                                      aataatGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATAAAATCTGGAATATGAAAGATGACTc                                                                                           >  1:547125/1‑143 (MQ=255)                                                        taatGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCg                                                                                         >  1:1133492/1‑143 (MQ=255)                                                          atGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCgtt                                                                                       <  1:989330/143‑1 (MQ=255)                                                            gTTCTGGT‑TAATAATACTGTAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGCAAATACAATCTGGAATATGAAAGATGACTCCgttgt                                                                                     >  2:213225/1‑143 (MQ=255)                                                            gTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACACTATTCTAATTGGAGCGACTAAACTCGTCAGCGGCACAACCCCGCAGAAGCCTTCAGAAACTACACCCTGCAATACGAAAGCTGACTACgtagt                                                                                     >  2:202751/1‑143 (MQ=255)                                                               cTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGCCTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTAc                                                                                  <  1:639274/143‑1 (MQ=255)                                                                tGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGAATCCGTTGTTAcc                                                                                 >  2:152642/1‑143 (MQ=255)                                                                 ggT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTAccc                                                                                <  2:1084374/143‑1 (MQ=255)                                                                  gT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACACTCCGGAATATGAAAGATGACTCCGTACTTACCCa                                                                               >  2:784385/1‑143 (MQ=255)                                                                     taataaTACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTGTCAGAAAAGACAATCTGGAATGTGGAAGACGACTCCGTTGTGACCCagc                                                                             >  2:923442/1‑141 (MQ=255)                                                                        taataCTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGa                                                                          <  1:848392/143‑1 (MQ=255)                                                                          ataCTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGCAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCACATGACt                                                                        >  1:626703/1‑143 (MQ=255)                                                                               ggagtgtaCTTAAACATAATTTCGTCCGAGTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTc                                                                   <  2:451418/136‑1 (MQ=255)                                                                                   gTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCCGACTAATTCAGAc                                                               >  2:802628/1‑143 (MQ=255)                                                                                    tGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACa                                                              <  1:406067/143‑1 (MQ=255)                                                                                    tGACTTAAACATAATTTCGTCCGACTCTATTCTAAATCGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACa                                                              <  1:906666/143‑1 (MQ=255)                                                                                        ttAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGCAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGta‑t                                                         >  2:908288/1‑143 (MQ=255)                                                                                        ttAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTAGCCATCTGACTGATTCAGACAGtgt                                                          >  1:187113/1‑141 (MQ=255)                                                                                        ttAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGta‑t                                                         >  1:1023391/1‑143 (MQ=255)                                                                                         gaaaCATAACTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGtc‑tt                                                        <  2:1234158/142‑1 (MQ=255)                                                                                          aaaCATAATTTCGTCCGACTCTATTCTAAATGGAGCGATTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGta‑tta                                                       <  2:635909/143‑1 (MQ=255)                                                                                           aaCATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGta‑tta‑t                                                     >  2:1123528/1‑143 (MQ=255)                                                                                           aaCATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGta‑tta‑t                                                     >  2:46047/1‑143 (MQ=255)                                                                                             cATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCa                                                   >  1:402508/1‑143 (MQ=255)                                                                                              aTAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCAATCTGACTCATTCAGGCAGTA‑TCA‑TCaa                                                  >  2:566757/1‑143 (MQ=255)                                                                                                   ttCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCttt                                             <  1:760234/143‑1 (MQ=255)                                                                                                   ttCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCttt                                             <  2:411506/143‑1 (MQ=255)                                                                                                   ttCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTATTACCCATCTGACTAATTCAGATAGTG‑TTA‑Taaaggttt                                             >  1:134325/1‑138 (MQ=255)                                                                                                    tCGTCCGACTCTATTCTAAATGGAGCGACTAATCTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTc                                            <  2:176312/143‑1 (MQ=255)                                                                                                     cGTCCGACTCTATTCTAAATGCAGCCACTACACTCGTCAGCGGCACAACCACGCTGACGCTTTCCGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTTTCCTTCTGCCTAATTCAGACAGTA‑TTA‑TCAATCTTTCg                                           <  2:949062/143‑1 (MQ=255)                                                                                                        ccGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACCGTA‑TCA‑TCAATCTTTCGTat                                        >  2:433790/1‑143 (MQ=255)                                                                                                          gACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGCCAGAA‑TTA‑TCAATCCTTGGTacga                                      >  1:459894/1‑143 (MQ=255)                                                                                                          gACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTatga                                      >  1:6698/1‑143 (MQ=255)                                                                                                               tATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTatgatgatg                                 >  1:975365/1‑143 (MQ=255)                                                                                                               tATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTatgatgatg                                 >  1:991048/1‑143 (MQ=255)                                                                                                                 ttCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGt                               >  1:104979/1‑143 (MQ=255)                                                                                                                 ttCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGt                               <  1:754478/143‑1 (MQ=255)                                                                                                                    tAAATGGACCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCaa                            <  2:98040/143‑1 (MQ=255)                                                                                                                     aaaTGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCaaa                           <  2:311584/143‑1 (MQ=255)                                                                                                                      actGGATCGATTAAACTCGTCTGCTGCACAACCACGCTGAAGGTTTCAGTCGATACAATCCCGAAATTTTAAATTGTGTCTTTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAAc                          <  2:886394/141‑1 (MQ=255)                                                                                                                       aTGGAGCGACTAAAGTCGTCAGCGGCACAACCACGCCGAAGCTTCCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACa                         <  2:598593/143‑1 (MQ=255)                                                                                                                       aTGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACa                         >  2:384423/1‑143 (MQ=255)                                                                                                                           aGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTa                     >  1:514410/1‑143 (MQ=255)                                                                                                                              gACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTGTGATGATGGTCAAACATTTAccc                  >  1:494701/1‑143 (MQ=255)                                                                                                                                 tAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCGGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAg               >  2:142023/1‑143 (MQ=255)                                                                                                                                   aaCTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGa             >  2:708897/1‑143 (MQ=255)                                                                                                                                      tCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTC‑TCAATCTTTCGTATGATGATGGTCAAACATATACCCAAGGaaaa          >  2:1085969/1‑143 (MQ=255)                                                                                                                                      tCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGaaaa          >  1:940742/1‑143 (MQ=255)                                                                                                                                      tCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGaaaa          >  1:439541/1‑143 (MQ=255)                                                                                                                                       cGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGaaaaa         <  2:1056968/143‑1 (MQ=255)                                                                                                                                       cGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGaaaaa         <  1:466857/143‑1 (MQ=255)                                                                                                                                         tCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCACGGAAAACCa       >  1:1000994/1‑143 (MQ=255)                                                                                                                                         tCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACa       >  1:582296/1‑143 (MQ=255)                                                                                                                                         tCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACa       >  1:625116/1‑143 (MQ=255)                                                                                                                                         tCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACa       <  1:706336/143‑1 (MQ=255)                                                                                                                                          cAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACAt      <  2:507198/143‑1 (MQ=255)                                                                                                                                           aGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACAtt     >  2:645788/1‑143 (MQ=255)                                                                                                                                              ggCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTCTGGAAATCAGAGAGCAGAGAGTGAATC‑‑TGATATGATGATGGTCAAACATTTACCCAAGGAAAAACATTAAc  >  2:1217112/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                                 ACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGT‑TAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTA‑TTA‑TCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACATTAAC  >  NC_000913/1220619‑1220901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.