Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	458,790	IS186 (–) +6 bp :: Δ1 bp	intergenic (+90/‑93)	clpX → / → lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458790 =	1 (0.010)	83 (1.040)	60/278	0.2	98.8%	intergenic (+90/‑98)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608008 =	NA (NA)					noncoding (2/1345 nt)	IS186	repeat region
*	?	NC_000913	= 458795	0 (0.000)	64 (0.810)	53/276	0.4	100%	intergenic (+95/‑93)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	= 609351	NA (NA)					noncoding (1345/1345 nt)	IS186	repeat region

ATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGC  >  NC_000913/607866‑608147                                                                                                                                               |                                                                                                                                            aTAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGTAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGCAGTAATc                                                                                                                                             >  2:1172953/1‑143 (MQ=255) aTAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATc                                                                                                                                             <  1:421538/143‑1 (MQ=255) aTAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATc                                                                                                                                             <  1:563952/143‑1 (MQ=255) aTAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATc                                                                                                                                             <  2:522548/143‑1 (MQ=255)   aGTGCGGTGTTTGACGGTGCTGGGATTTACGCTTCTGGGCGGAGGCTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATccc                                                                                                                                           <  2:1305985/143‑1 (MQ=255)          tgtTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAgcg                                                                                                                                    >  2:427720/1‑143 (MQ=255)            tttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCt                                                                                                                                  <  1:488247/143‑1 (MQ=255)            tttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGATTACGAACCGAAGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCt                                                                                                                                  >  2:1329987/1‑143 (MQ=255)               aaCGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGGTTAAGGCTGTTCTCGCTTACGAAACGAAGAAGGAGCCGTCGTGCGGGGAGTGATCCCATAAGCGCTAAc                                                                                                                               >  2:726791/1‑143 (MQ=255)                 cGGTGCTGGGATTTACGCTTGGGGTCGGAGACTCGCTGTGTGAGTTTACCGTGAGGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACtt                                                                                                                             <  2:1247865/143‑1 (MQ=255)                   gTGCTGGGATTTACGCGTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTaa                                                                                                                           <  2:661482/143‑1 (MQ=255)                        gggATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAAGGTAGAGTTTAAGGGTGTTCTCGCTTACGAACCGAAGGAGTACCCGGTGTGTAGGGATTCATACACAAAGCGCCAACTTCAggact                                                                                                                      >  2:1326540/1‑140 (MQ=255)                                 gCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGGGCTAACTTAAGGGTGGTGgtagta                                                                                                             >  1:1390437/1‑143 (MQ=255)                                 gCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa                                                                                                             >  2:792844/1‑143 (MQ=255)                                  gttgttgTCGGAGCCTCGCTGTGTTGGTTTACGGTGTATGAACGTAATATTGAGTTTAAGGCTGTTCTGTCTTGCGATCCGAATAAGTAGCCGTTGTGCGGGTAGTAATCCTATATGTTCTAATTTAAGGGTTGTGGTATTAc                                                                                                            <  2:477015/137‑1 (MQ=255)                                   ttCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGCGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg                                                                                                           >  1:748850/1‑143 (MQ=255)                                     cTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                                         <  1:302435/143‑1 (MQ=255)                                       ggTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATGCCATAAGCGCTAACTTAAGGGTGGTGGTATTGCGcccg                                                                                                       >  2:1051019/1‑141 (MQ=255)                                         tCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGCGTTTAAGGCTGTTCTCGCTTCCGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATCAGCGCTCACCTAAGGGCTGAGGTATTACGCCTgct                                                                                                     >  2:814240/1‑141 (MQ=255)                                         tCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGGAGAAGTAGCCGGTGTGCGGGGAGTAATCCCATAAGAGCTGACTTAAGGGTTGTGGTGTTACGCCGGat                                                                                                     >  2:1406623/1‑143 (MQ=255)                                              gaCTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt                                                                                                <  1:838787/143‑1 (MQ=255)                                                 tCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTCAAGGGTTGTGGTGTTACGCCTGATATGATTTa                                                                                             >  2:1301797/1‑143 (MQ=255)                                                   gCTGTGTGAGTTTACGGTGAAGGAAGGTAATATTGAGGTTAAGGCTGTTCTCGCTTACGAACCGGAGAAGTAGGCGTTGTGCGGGGGGGAGTCCCATACGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATAGGTTTTAAc                                                                                           >  1:367236/1‑143 (MQ=37)                                                         tgAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCGGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATCACGCCTGCTATGATTTAACGTGcct                                                                                     >  2:273981/1‑142 (MQ=255)                                                          gggTTTGCGGTGGAGGAGCGTAGTATGGGGGTGAGGGGTGTGCTCGCTTACGAACCGAAGAAGGAGCCGTGGGGGGGGGAGTAAGCCCATAGGCGCTAACTTAAGGGGTGGGGTATTACGCCTGATATGATTTAACGTGCCGa                                                                                    <  2:1213421/141‑1 (MQ=16)                                                             tttACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGAAGTACGCCAGCTATGAGATAACGTGCCGATGa                                                                                 >  2:1326783/1‑143 (MQ=38)                                                                  ggTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCGTGATATGATTTAACGTGCCGATGAATTAc                                                                            >  1:773404/1‑143 (MQ=255)                                                                      aaGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCAGAAGCGCTAACTGAAGGGTTGGGGTGTTACGCCTGATATGAATTAACGTGCCGAAGAATAACtctc                                                                        >  2:991516/1‑143 (MQ=255)                                                                        ttttcGTTATATTTAGTTTAAGGCTGTACTCGCGTACGAACCGAGGAAGGAGCCGGTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                      <  1:455243/139‑1 (MQ=21)                                                                          aaCGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTCAGGGCTGTAGTGGGACGCGTGATATGATTTAACGTGCCGCTGACTTACTCTCACgc                                                                    >  2:944907/1‑142 (MQ=255)                                                                            cGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCACATAGGCGCTAACTTAAGGATTGTGGTATTACGCCTGATATGATTTAACGTGGCGATGAATGAGTCTCACggtc                                                                  >  2:1073236/1‑140 (MQ=25)                                                                              tAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCGCGTAAGCGCTAACTTAAGGGTTGTGGTTGTACGCCTGATGTGCTTTAGCGTGCCGATGAATGAGTCTGCCGATAAc                                                                >  1:601847/1‑143 (MQ=25)                                                                               aaTATTGAGTTTAAGGCTGTCCTCTCTTACGAACCGAAGAAGTCGGCGTGCGGCGGTGACTAATCCCAGAATCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACt                                                               <  2:642200/143‑1 (MQ=18)                                                                                atatTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGTTTTAACGTGCCGATGAATTACTCTCACGATAACTg                                                              >  1:693936/1‑143 (MQ=255)                                                                                   ttGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGc                                                                                       >  1:814058/1‑115 (MQ=255)                                                                                   ttGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGc                                                                                       <  2:814058/115‑1 (MQ=255)                                                                                   ttGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTc                                                           >  2:479372/1‑143 (MQ=255)                                                                                    tGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTGTCACGTTTACTGGtga                                                          >  1:39845/1‑141 (MQ=255)                                                                                    tGAGTGTAAGGCTGGGCTCGCTTACGAACCGAAGAAGCAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTGGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCa                                                          <  1:1184862/143‑1 (MQ=21)                                                                                     gAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTGGTGCGGGGAGTAATCCCATAAGCGCTAACTGAAGGGTGGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAg                                                         <  1:417570/143‑1 (MQ=255)                                                                                             ggCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACAAGCCGATCAACGTCTCGCGCGATAACTGGTCAGCAATTCTg                                                 >  1:263696/1‑143 (MQ=21)                                                                                              gCTGTGCGCGCTTACGAGCGGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                <  2:1078579/143‑1 (MQ=255)                                                                                               cTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                               <  1:427720/143‑1 (MQ=255)                                                                                                 gTTCTCGCGTACGAACCGAGGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATGACTGGTCAGCAATTCTGGccc                                             <  1:239604/143‑1 (MQ=255)                                                                                                  ttCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCa                                            <  1:792844/143‑1 (MQ=255)                                                                                                  ttCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCa                                            >  1:167692/1‑143 (MQ=255)                                                                                                    ctcGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTACCTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCGCACGATAACTGGTCAGCAATTCTGGCCCata                                          >  1:132982/1‑143 (MQ=255)                                                                                                     gcGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCatat                                         <  2:837476/142‑1 (MQ=255)                                                                                                       gCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                       <  1:180938/143‑1 (MQ=255)                                                                                                         ttACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGt                                     >  1:923727/1‑143 (MQ=255)                                                                                                         ttACGAACCGAAGAAGGAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGt                                     <  1:290012/143‑1 (MQ=255)                                                                                                             gAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTATGCATGATATGATATAAAGTGCAAATAAATTAATCTCACAATAACTGATAAAAAATACTGGACAATATTGGTAAga                                 >  1:1164956/1‑142 (MQ=18)                                                                                                                 cGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCGga                             >  2:381617/1‑143 (MQ=255)                                                                                                                 cGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCga                             >  2:1060717/1‑143 (MQ=255)                                                                                                                 cGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTAGTACGCCTGATATGATTTAACGTGCCGGTGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAACTTTGTCAGCCCga                             >  2:3460/1‑143 (MQ=17)                                                                                                                  gaagaaGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTAGTACGCCTGATATGATTTAACGTGCCGATGAATTACGCTCACGATAACTGGTCAGCAATTCTGGCCCAGAGTGGTACGCCCgaa                            >  1:483397/1‑143 (MQ=17)                                                                                                                   aagaagTGGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaag                           <  1:391507/143‑1 (MQ=255)                                                                                                                       agTAGCCGTTGTGCGGGTAGTAATCCCATAAGCGCTAACTTAAGTGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACTATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                       <  1:1087076/143‑1 (MQ=255)                                                                                                                       agTAGCCGTTGTGCGGGGAGTAAGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                       <  2:748850/143‑1 (MQ=255)                                                                                                                         tAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGTGTTGTGGTATTACGCCTGATATGATTTGGCGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTgg                     <  1:830562/143‑1 (MQ=255)                                                                                                                           gCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAt                   >  1:1214067/1‑143 (MQ=255)                                                                                                                                    cGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATGTTGGTAAGCCCGAAGAAGTGGATACTTCGGCa          >  2:87825/1‑143 (MQ=255)                                                                                                                                       ggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGt       >  2:263491/1‑143 (MQ=35)                                                                                                                                           tAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGGAATTCGAGCCCATATTGGTAAGCCCGAAGAACTGGATTCTTCGGCCCGTGAtt   >  1:382257/1‑142 (MQ=11)                                                                                                                                           tAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATg   >  2:1344701/1‑143 (MQ=32)                                                                                                                                            aaTCCCATAAGCGCTAACTTAGGGGTGGTGGTATTACGCCTCAAAAAACAGAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGc  <  1:327586/143‑1 (MQ=11)                                                                                                                                               |                                                                                                                                            ATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGC  >  NC_000913/607866‑608147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.