| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1470336 = | NA (NA) | 52 (0.810) | 4/284 | 9.5 | NA | noncoding (1041/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1470477‑1470336‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGC < NC_000913/1979270‑1979131 TCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGGTCATGTTGAGTAGATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCG < 2:154865/143‑1 CTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGG > 2:790294/1‑143 TTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGA < 1:1120948/143‑1 TTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGA < 1:611383/143‑1 TCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGGTTAGCTGAGCAGCAACCAGTTCTAGTGCATGTTGAGTATATTTGGTAAGACTTGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATG < 2:420545/143‑1 TGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGC < 1:447982/143‑1 AACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTA > 2:1155530/1‑143 AACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCACATTTGTGTTCTCGGTGATGCTGCTAACTTA > 2:554779/1‑143 TTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTCTATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTG > 2:210112/1‑143 CAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGAT > 1:477747/1‑143 CTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTG > 1:936875/1‑143 CTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTG < 1:530627/143‑1 TTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGGTCATGTTGAGTATATGGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATGTGTGTTCTCGGTGAGGCTCCCAACTTGCGGAGCTAGTGT > 2:677487/1‑143 TCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGA < 1:850790/143‑1 ggggTGTGGTTTCGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG < 1:622342/139‑1 GGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGAAATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG < 1:845172/143‑1 TGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCACATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATCTAGAGTATAATGGTGT > 2:479082/1‑143 TTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA < 1:813117/143‑1 TAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG < 1:1013336/143‑1 GCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT > 2:487135/1‑143 ggccGCAACCAGCTCTAGTTCATGTTGAGTATACTGGGCAGGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTC < 2:893466/139‑1 cGCAGCAACCAGATCTAGTTCCTGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTC < 1:652839/142‑1 GCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT > 1:720925/1‑143 ACCAGATCTAGTTTATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGGTCCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGtc > 2:709968/1‑141 ACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCCACTTACTGATTTAGTGTCTGCTGGTGTTTTTGAGGCGCTCCGGTGGC > 2:339889/1‑143 ATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTG < 1:644953/143‑1 TAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGAGTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTCGCTTCTGTTT > 2:1028252/1‑143 gtcctttTTGAGTATATTGGGCAGTACTTTTCTTTTCAGGAAAGTACTGCCGCTTTAGTCCATTTGTGTTCTCGGTGATGCTGCCAACTTTCTGGTTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCT < 2:983682/136‑1 GTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCACATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCT > 2:192622/1‑143 TCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAT > 2:961544/1‑143 TCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAT > 2:715653/1‑143 cacGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATC < 1:219284/140‑1 GTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGAGTATGATGGTGTTTTTGAGTAGCTCCAGTGGCTTCAGGTTATATCAGC > 2:369571/1‑143 GTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTCCCACCTTACCGTGTTAGTGTATGATGGTGTTTTTGAGGTCCTCCAGTGGCTTCTGTTTCTATCAcc > 2:133684/1‑141 TTGCGTATCTTGGGCAAGTCATGTTTTTTTAGGAAAGTACTGCCGTCTTAGTCTATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT < 2:72639/143‑1 TTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT > 2:349132/1‑143 TTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT < 1:602477/143‑1 tactcTATTGGGTATGTCTTGTCTTTTTAGGAAAGTACTGCCGATTTTGTCCATTTGTGTTCTCGGTGATGCTGCCAACTTTCTGATTTAGTGTATGATGGTGTTTTTGCGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGT < 2:355507/138‑1 TATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCCGTGGCTTATGTTTCTATCAGCTGTCCC > 2:198641/1‑143 tcTTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTCGTCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTGGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC < 2:678314/141‑1 GGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATACTACCAACTTACTGAATTAGTGTATGATGGTGTTTTTGAAGTGCTCCAGTGGCTTCTGATTCTATCAGCTGTCCCACCTGT > 2:972071/1‑143 cGCAAGGCATGTCTTTTTAGTAGAGTACTGCCGCATTAGCGCATTTGTGTTCTTGTTGTTGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGTGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTT < 2:520032/142‑1 GCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTCCTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTC > 1:854026/1‑143 GCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGACTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCAGTCCCTCCTGTTa > 2:817645/1‑142 cccTGTCTTTTTTGCCACGTACGGCCGATTTAGCCTCTTTGTGTTCTCGGTGATGCTGCCAACTTGCGGATTTACTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTA < 2:655112/140‑1 TTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCCACTTACTCATTTGGTGTATGATGGTGTTTTTGAGGTGCTCCCGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGG > 1:45336/1‑143 TAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTG < 1:388872/143‑1 CTGCCGAATTAGCCCATTTGTGTTCTCTGTGATGTTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTGGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACG < 2:734210/143‑1 TGCCGAATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGCTTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGG > 1:1107361/1‑143 AATTAGCCCATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGCTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAA > 2:460690/1‑143 ATTTGTGTTCTCGGTGATGCTGCCAACTTACTGATTTAGAGTATGATGGTGTTTTTGAGGTGCCACAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGCCGGGGCGGTGCGTCACGCCACAAGCACCGCgc > 2:1016678/1‑141 CTCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCCGCTACTCGCGGGGCGGTGCGTAGCGGCAGAAGCACCGCCCGGCAGCAGC > 2:1113451/1‑143 TCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1470477‑1470336‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGC < NC_000913/1979270‑1979131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |