New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1470336 =NA (NA)52 (0.810) 4/284 9.5 NA noncoding (1041/1221 nt) IS30 repeat region
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region
Rejected: Coverage evenness skew score above cutoff.

GACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACAT  >  NC_000913/1470234‑1470404
                                                                                                      |                                                                    
gacaagggAATGGAACTGGCCAGACATCTAGAAGTTACTTTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAACACAAATGGGCTAATTCGGCAGTACTTTCCTaaaaa                              <  2:953897/137‑1 (MQ=0)
                            cagactgtACTGTCAGCACCGGCGTTAAAGGTTACTTCTCCGAGCCTCAGAGTCCTTGGCAGCGGGGAACAAATGATAACACAAATGGGCTAATTCTGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACAt  <  2:135890/136‑1 (MQ=1)
                                                                                                      |                                                                    
GACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACAT  >  NC_000913/1470234‑1470404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.