Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,049,903 IS2 (–) +5 bp noncoding (5‑9/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4049903 =0 (0.000)91 (1.870) 68/282 0.0 100% noncoding (5/109 nt) spf Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
?NC_000913 4498181 = NA (NA)noncoding (1/1331 nt) IS2 repeat region
* ? NC_000913 = 40499070 (0.000)105 (2.150) 76/282 0.0 100% noncoding (9/109 nt) spf Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
?NC_000913 = 4499511 NA (NA)noncoding (1331/1331 nt) IS2 repeat region

CATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4050040‑4049903
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAA  >  NC_000913/4498181‑4498322
                                                                                                                                                                                                                                                                                        
CATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGAC                                                                                                                                           <  1:373989/143‑1
   CAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTACAAGGTCTGAACGCTAGCACATCTTACCTCTGTACCTCGCCTGG                                                                                                                                        >  1:316013/1‑143
    AGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGC                                                                                                                                       <  1:55789/143‑1
       CATTACTGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCC                                                                                                                                    <  2:501488/143‑1
        ATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCC                                                                                                                                   >  1:66620/1‑143
            CGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAA                                                                                                                               >  2:570181/1‑143
            CGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAA                                                                                                                               >  1:628925/1‑143
                 CTTTTCTGTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCC                                                                                                                          <  2:591143/143‑1
                   TTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACGTAGACTGGCCCCCTGAATCTCCAG                                                                                                                        >  2:254809/1‑143
                        TTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAAC                                                                                                                   <  1:655536/143‑1
                         TCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACC                                                                                                                  <  1:789515/143‑1
                         TCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACC                                                                                                                  >  1:707062/1‑143
                           GCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGGACATATTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAA                                                                                                                >  1:616770/1‑143
                            CCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCCGACCACCAAT                                                                                                               >  2:591690/1‑143
                            CCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCCGACAACCAAT                                                                                                               >  2:562670/1‑143
                            CCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAAT                                                                                                               >  1:624144/1‑143
                            CCCAATAAAAAACGCCCCAGTCAGTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGCTTACGTGACGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAAT                                                                                                               >  2:733595/1‑143
                             CCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCACCCAAATCCGATTACGGGACGTAAAAGGTCTGAAAGATAGAACACCTTACCTCCGTACCTAGACTGCCCCCCTCAACCTCCAGCCACCCAATg                                                                                                              >  2:76858/1‑142
                              CAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTTAGACCAAACCTATCACGTGCTGTATGATACCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATAT                                                                                                             >  1:412319/1‑143
                              CAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATAT                                                                                                             >  1:92958/1‑143
                               AATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAACGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCGCTGAATCTCCAGACAGCCAATATa                                                                                                            >  1:624330/1‑142
                                ATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGTCCCCTGAATCTCCAGACAACCAATATCA                                                                                                           <  2:108603/143‑1
                                      agCGCCCCAGTCAGTGCTGACGGGGGCGGCTAAAAGATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAtt                                                                                                     <  2:340017/141‑3
                                      AACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAA                                                                                                     <  1:324536/143‑1
                                      AACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAA                                                                                                     <  1:574532/143‑1
                                      AACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAA                                                                                                     <  1:675854/143‑1
                                         GCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA                                                                                                  <  1:750762/143‑1
                                          aCCCACTCATTACTGACTTGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAG                                                                                                 <  1:215919/142‑1
                                          CCCCAGTCATTACTCACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAG                                                                                                 <  2:311764/143‑1
                                           CCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGT                                                                                                >  2:699265/1‑143
                                            CCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACCTACATACGTG                                                                                               >  2:706789/1‑143
                                              AGTCATTACTGTCTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                             <  2:138333/143‑1
                                                TCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTAACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGCTAG                                                                                           >  2:277065/1‑143
                                                 CATTACTGACGGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGT                                                                                          <  2:706940/143‑1
                                                  ATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATGAGTGATAGTC                                                                                         >  1:736011/1‑143
                                                   TTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGCCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGCATCTCCAGACCACCAATAGCCCCTAAATCAGTGAacacac                                                                                        >  2:92129/1‑137
                                                     ACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTA                                                                                      <  2:234749/143‑1
                                                      gTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTATGTGAAGTAAAAGGTCTGAAAGATCGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAACATCACTTAAATAAGTGATAGTCTTAA                                                                                     <  2:846374/142‑1
                                                      cgGACTGGGGCGGCTAAGATATTCAGCCAAAGCCGATTGCGTGAAGTAAAAGGGCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA                                                                                     <  2:84098/141‑1
                                                      CTGACTGGGGCGTCTAAAATATTCAGCGAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACGTCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA                                                                                     <  2:755001/143‑1
                                                      CTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA                                                                                     <  1:167038/143‑1
                                                      CTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGAGAAGGAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAACTGATAGTCTTAA                                                                                     >  2:397090/1‑143
                                                        GACTGGGGCGGCTAAGAGATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATA                                                                                   <  2:53615/143‑1
                                                         ACTGGGGCAGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGA                                                                                                                       >  2:432425/1‑106
                                                         ACTGGGGCAGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGA                                                                                                                       <  1:432425/106‑1
                                                             GGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGT                                                                              >  1:16947/1‑143
                                                                 GGCTAAAATATCCCGCCAACTCCGATTACTTGAAGTAAAAGTGCTGAAAGATAGAACTTCTTACCTCTGTCCCTAGACTGGCCCCCTGATTCTCCAGACAACCATTATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTT                                                                          <  1:465290/143‑1
                                                                  GCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                                                                         <  1:570181/143‑1
                                                                   CTAAAATATTCAGCCAAATCCGATTACGTNAAGTAAAAGGTCTNAAAGATAGAACATCTTACCTCTGTACCTANACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAG                                                                        <  1:89302/143‑1
                                                                    TAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACT                                                                                                         <  2:883097/109‑1
                                                                    TAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGACCCCTGAATCTCCAGACAACCAATATCACT                                                                                                         >  1:883097/1‑109
                                                                        ATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAG                                                                   >  2:460477/1‑143
                                                                            TCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAT                                                               <  1:701104/143‑1
                                                                              agcgagATCCCATTGCGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG                                                             <  2:137562/137‑1
                                                                              AGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG                                                             <  2:251576/143‑1
                                                                              AGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGGACCTAGACTGGCCCGCTGAATCTCCAGACAACCAATCTCACTTAACTCAGTGATAGTCTTAATACTAACTTTCAGCCTAGTCGTTG                                                             >  2:227827/1‑143
                                                                               GCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGG                                                            <  2:66620/143‑1
                                                                                CCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACTACTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGA                                                           <  2:766109/143‑1
                                                                                   AATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAA                                                        <  1:57972/143‑1
                                                                                    ATCGGAGTACGTGAAGCAGAAGGTCTGAGAGATAGAACAGCTTACCTCTGTACCTAGACGGGCCCCCTGAATCTCCAGACAACGAATATCACTTAAATAAGTGAGAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAC                                                       <  2:296185/143‑1
                                                                                     TCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACA                                                      <  1:402973/143‑1
                                                                                       CGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGA                                                    >  2:119083/1‑143
                                                                                         ATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATG                                                  <  2:566526/143‑1
                                                                                          tttaGTGCAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGACTATCAAGACATCCAATCTCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGA                                                 <  2:720369/139‑1
                                                                                          gTACGTGAAGGAAAAGGTGTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGA                                                 <  1:396239/142‑1
                                                                                             cggGAAGTAAAAGGTCTGAAAGATAGAACTTCTTACCTCTGTACCTATACTGGCCGCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGGCTTAATACTAGTTTGTAGACTAGTCATTGGAGAACAGATGATTG                                              <  2:415222/140‑1
                                                                                              GTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA                                             >  1:211060/1‑143
                                                                                              GTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTCAAATAAGTGATAGTCTTCATACTCGTTTTTAGACTAGTCATTGGCGAACAGTTGATTGA                                             >  1:59572/1‑143
                                                                                               TGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGAT                                            <  1:515229/143‑1
                                                                                                    TAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGGCATTGGAGAACAGATGATTGATGTCTT                                       >  1:225863/1‑143
                                                                                                     AAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGAAAACGAATATCACTTAAATAAGTGATAGTATTAATACTAGTTATTAGACGAGTCATTGGAGAACAGATGAGTGATGTataa                                      >  1:696155/1‑139
                                                                                                      gAAGGTGTGGAAGATAGAAGATCTGACCTCTGTACATAGATTGGACCCCTGAATCTCCAGACAACCAATATCAGTGAAATAAGTGATAGTCTTAGTACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAG                                     <  2:807295/142‑1
                                                                                                             TGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGA                              <  1:699265/143‑1
                                                                                                             TGAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTCTTTAGTCTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGA                              >  2:306445/1‑143
                                                                                                              GAAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAG                             >  1:236183/1‑143
                                                                                                               AAAGATAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGAATTTAGACTTGTCATTGGAGAACAGAGGAGTGATGTGTTAGGGCCGGAGA                            >  1:120591/1‑143
                                                                                                                    TAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGC                       <  2:316013/143‑1
                                                                                                                    TAGAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGCGCCGGAGAAACGC                       >  2:422836/1‑143
                                                                                                                      GAACATCTTACCTCTGTCCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATCTCACCTCAATAAGTGATAGTCTTAATACTAGCTTTTAGACTAGTCAGTGGCAAACAGATGATGGATGTCTTAGGGCAGGAGAAACGCAG                     >  2:195212/1‑143
                                                                                                                      GAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAG                     >  2:10901/1‑143
                                                                                                                      GAACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAG                     >  1:584415/1‑143
                                                                                                                       AACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGTCCGGAAACACGCAGc                    >  2:755897/1‑142
                                                                                                                       AACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGA                    >  1:617638/1‑143
                                                                                                                       AACATCTTACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGAGGTCTTAGGGCCGGAGAAACGCAGA                    >  2:96688/1‑143
                                                                                                                           TCTTCCCTCTGTCCCGAGACGGGCCCCCTGAATCTACATACAACCAATATCACTTAAATAAGTGATAGTCTTAATCAAAAAATTCAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGC                <  2:822191/143‑1
                                                                                                                               ACCTCTGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAC            <  2:92958/143‑1
                                                                                                                                   CTGTACCTAGACTGGCCCCCTGAATCTCCAGACCACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTCGTCATTGGAGAACAGATGACTGATGTCTTAGGGCAGGAAGAACGCAGACGGCCTACCgcg        >  2:282451/1‑140
                                                                                                                                     GTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGCGGACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACAGCGTACCACACA      >  1:407656/1‑143
                                                                                                                                     GTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACA      >  1:340839/1‑143
                                                                                                                                      tatCTAGACTGGCCCCCTGAATCTCCATACAACCAATATCTCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGCACAGATAGTAAAAGTCTTGTGGCCGGAGAAACGCAGACGGCGTACCACACAG     <  2:190105/140‑1
                                                                                                                                         CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACCGGAA  >  2:558571/1‑143
                                                                                                                                                                                                                                                                                        
CATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTACCTCTGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4050040‑4049903
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAA  >  NC_000913/4498181‑4498322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.