New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3146750 =	45 (0.920)	3 (0.070)	3/260	7.1	7.5%	intergenic (‑13/+106)	yghW/yghX	DUF2623 family protein/pseudogene, dienlactone hydrolase family
	?	NC_000913	3146776 =	33 (0.730)					intergenic (‑39/+80)	yghW/yghX	DUF2623 family protein/pseudogene, dienlactone hydrolase family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATCCGGTGTGAGTAGCCTAATACAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCGTAAGAGATAAACCTATCAGGAGAGATATTTATCGAACCATTTCAGTGTC  >  NC_000913/3146609‑3146889                                                                                                                                              |                                                                                                                                            cATCCGGTGTGAGTAGCCTAATACAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTCATCCCGCCATTAAGCCTTTACCAACATGGTTATTCATCGTTCACCTCGTTc                                                                                                                                            >  2:501465/1‑143 (MQ=255)  aTCCGGTGTGAGTAGCCTAATACAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTca                                                                                                                                           >  1:664127/1‑142 (MQ=255)   tCCGGTGTGAGTAGCCTAATACAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCTTTAAACCTTTCCCAACATCGTTATTTATCGTTCACCTCCTTTGc                                                                                                                                          >  2:24790/1‑143 (MQ=255)     cGGTGTGAGTAGCCTAATACAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCta                                                                                                                                        <  1:758240/143‑1 (MQ=255)       gtgtGAGTAGCCTAATACAAAACCGCGTTTATAATCGGCACAGAATTTCGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCtata                                                                                                                                      >  2:293170/1‑143 (MQ=255)                 ccTAATACAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTCTATAGTGTCata                                                                                                                            >  2:336228/1‑143 (MQ=255)                      tACAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAg                                                                                                                       >  2:556395/1‑143 (MQ=255)                       ccataaCCGCGTTTATAATCGGCACAGACTTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGc                                                                                                                      <  1:857529/139‑1 (MQ=255)                       aCAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGGGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGc                                                                                                                      <  2:598782/143‑1 (MQ=255)                       aCAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGc                                                                                                                      >  1:797308/1‑143 (MQ=255)                       aCAAAACCGCGTTTAGAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGc                                                                                                                      <  2:599971/143‑1 (MQ=255)                        cAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTCCCGAAATGGTTATTCATCGTTCACCTCATTCGCTCTATATAGTCATCTATcgcg                                                                                                                     >  2:493559/1‑143 (MQ=255)                          aaaCCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGat                                                                                                                   >  1:330490/1‑143 (MQ=255)                           aaCCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGata                                                                                                                  >  1:492357/1‑143 (MQ=255)                            aCCGCGTCTATAATCGGCACAGAATTTTGTCCCATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAACATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGatat                                                                                                                 <  1:606812/143‑1 (MQ=255)                             ccGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATAtt                                                                                                                >  1:622979/1‑143 (MQ=255)                              gccgTCTATGATCGGCCGAGAATTTTTTCACATTCACGTCACTTTCGTCCTGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCATAATGGTTATTCAGCGTTCACCTCATTCGCTATATATGACAATATATAGCGaatgag                                                                                                               <  2:87454/141‑6 (MQ=255)                               gcgTTTATAATCGGAACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATGACAATATATAGCGaatgagg                                                                                                              <  1:84698/143‑7 (MQ=255)                                 gTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAg                                                                                                            <  2:314899/143‑1 (MQ=255)                                     ataATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGGTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCaa                                                                                                        >  1:850037/1‑143 (MQ=255)                                     acaaTCGGCACAGAATTTTGTCACATTAACCGCCCTGTCGGCAGGCTTTGCTTTTAATCCCGACAAAAGGGCTGTACCAAAAAGGTTATTCATCGGTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCaa                                                                                                        <  1:509214/141‑1 (MQ=255)                                       aaTCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATCTATAGCGATATTTTAGGCAAAg                                                                                                      >  2:797165/1‑143 (MQ=255)                                         tCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGaa                                                                                                    >  2:291398/1‑143 (MQ=255)                                           ggCACAGTATTTTGTCACATTAACCGGACTGCCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACg                                                                                                  <  2:607815/143‑1 (MQ=255)                                                        gTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACg                                                                                     <  1:293170/143‑1 (MQ=255)                                                         tCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGc                                                                                    >  1:109551/1‑143 (MQ=255)                                                           acaTTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTa                                                                                  >  2:837654/1‑143 (MQ=255)                                                                     cccTGTCGTCATGCGTTGCTTTTAATCCCCCCATTAACCCTGTGCCAACATGGTTATTCATCGTTCACCTCACTCGCTATATATTGTCATATATCGCGATATTTTAGGCAACGCACGACTTTTGCGCCCGCAATTTTTCCaca                                                                        >  2:318230/3‑141 (MQ=255)                                                                     cACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATg                                                                        >  1:760071/1‑143 (MQ=255)                                                                         gTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTg                                                                    <  1:137335/143‑1 (MQ=255)                                                                                        ttttAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCCTATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTACATGCTTGGTTAGGACGTAATcg                                                     >  1:118330/1‑142 (MQ=255)                                                                                        ttttAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTCGTTTAAGACGTAATcc                                                     >  2:129013/1‑143 (MQ=255)                                                                                          ttAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCg                                                   <  1:634532/143‑1 (MQ=255)                                                                                              tCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCGTAag                                               >  1:694019/1‑143 (MQ=255)                                                                                                 cGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATCTTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGCCGTAATCCCGTAAgcga                                            >  2:41422/1‑143 (MQ=255)                                                                                                 cGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCGTAAgaga                                            >  1:362950/1‑143 (MQ=255)                                                                                                          gCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCGTAAGAGATAAACCTAt                                   <  2:507452/143‑1 (MQ=255)                                                                                                                aCCAGAATGGTTATTGATCGTTCACCTCATTCGCTAGATATTGGCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCGTGTTTAAGACGTAATCCCGTAAGAGATAAACCTATCAGgag                             <  2:166067/143‑1 (MQ=255)                                                                                                                  cAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCGTAAGAGAGAAACCTATCAGgagag                           >  2:495766/1‑143 (MQ=255)                                                                                                                   aaaaTGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACAACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCGGTAACAGATAAACCTAACAGgagaac                          >  2:221479/1‑141 (MQ=255)                                                                                                                              tCATCGTTCACCTCATTCGCTATATATCGTCCCCTCTACCTGTGGTTTTGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCGTAAGAGATAAACCTATCAGGAGAGATATTTATCGaa               <  1:369890/143‑1 (MQ=255)                                                                                                                               cATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCGTAAGAGATAAACCTATCAGGAGAGATATTTATCGAAc              <  2:219999/143‑1 (MQ=255)                                                                                                                                       aCCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTaa                                                               <  2:520096/86‑1 (MQ=255)                                                                                                                                       aCCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTaa                                                               >  1:520096/1‑86 (MQ=255)                                                                                                                                           cATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCGTAAGAGATAAACCTATCAGGAGAGATATTTATCGAACCATTTCAGTGTc  <  2:376579/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                            CATCCGGTGTGAGTAGCCTAATACAAAACCGCGTTTATAATCGGCACAGAATTTTGTCACATTAACCGCACTGTCGGCATGCGTTGCTTTTAATCCCGCCATTAAGCCTTTACCAAAATGGTTATTCATCGTTCACCTCATTCGCTATATATTGTCATATATAGCGATATTTTAGGCAAAGAACGACTTTTGCGCACGCTATTTTTTCATGCTTGTTTAAGACGTAATCCCGTAAGAGATAAACCTATCAGGAGAGATATTTATCGAACCATTTCAGTGTC  >  NC_000913/3146609‑3146889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.