| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,979,486 | IS5 (+) +4 bp | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 75 (1.540) | 52/282 | 0.0 | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 41 (0.840) | 32/282 | 0.6 | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGA > NC_000913/2289972‑2290255 | aaGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCa > 1:884245/1‑143 (MQ=11) aaaTCTCTTTTCTGGTCTGACGGCGCTTCCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAAc < 2:612498/143‑1 (MQ=18) tctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATCTCAGGGA‑CTTGTCAGCCCCTTGTATAACGCTGt > 2:96617/1‑143 (MQ=11) tcgtttCTGGTCTGACGGCGCTTACTGCTGGATTCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAAAGATGt < 2:155065/140‑1 (MQ=11) tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCGATAACGCTGTAGc > 1:788407/1‑143 (MQ=38) tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGCA‑CTTGTTCTCACCTTCCATAACGCTGTAGc > 1:506937/1‑143 (MQ=255) ttgtGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGcc < 1:802562/140‑1 (MQ=255) tCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGAGGACAAACATGATCTCATATCAGGGA‑CTTGGTGGCACCTTCCATAACGGGGTAgggc > 2:658783/1‑140 (MQ=11) cTGACGGTGCTTACGGCTGAATTCACTGTGGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGaa < 2:781579/143‑1 (MQ=255) tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTGGATGACTCATGATGAACCCTGTTCTATGGCTGCAGATGACAAACATGCTCTCATATCAGAGA‑CCTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAAc > 2:67120/1‑143 (MQ=14) tGACGGCGCGTACTGCTGGATTCGGTGTCGGCGGTGGTGTGTTGATGGCTGATGGTGTTTCTTGTTCTGTGGCTCCAGATGACAAACATGATCTCATATCAGGGT‑CTTCTTAGCACCTTCCATAACGCTGTAGCCACCAGAAc < 2:226043/143‑1 (MQ=12) ttACTGCTGAATGCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATCGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGc < 2:737247/143‑1 (MQ=255) tACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCg < 1:636660/143‑1 (MQ=255) tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACCTGATCTCAGATCAGCGC‑CTACTTCGCACCTTCCATAACGCTGTAGCCCCCAGAACCGATATTGCGGaa > 2:666348/1‑143 (MQ=17) ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCCTCCATAACGCTGTAGCCACCAGAACAGATATCGCGGAACg > 2:707567/1‑143 (MQ=255) tgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGACCAGATATTGCGGAACgc > 1:671301/1‑142 (MQ=255) ttCACTGTCGGCTAAGGTAAGTTGATGCCTCATGCTCAACCCATTCCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACaaa < 1:602413/143‑1 (MQ=18) aCTGTCGGCGAAGGTAAGTTGATGACACATGATGAACCCTGTTCTATGGCTCCAGATGACAAACAGGATCACATGTCAGGGA‑CTTGTTCGCAACGAACAAAACGCCGTAGCCACCAGAATAGATATTCCGACACGACAAacag > 2:391342/1‑143 (MQ=14) tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATCACGCTGTAGCCACCAGAACAGCTAGTGCGGAACGACAAAGAGaa > 2:792787/1‑143 (MQ=255) gggggCGAAGGGAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa < 2:170687/140‑1 (MQ=255) tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGcc < 2:239260/108‑1 (MQ=255) tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGcc > 1:239260/1‑108 (MQ=255) tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAAc > 2:118511/1‑143 (MQ=255) cGAAGGGAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGaa < 2:401484/143‑1 (MQ=255) gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCGCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACCAAGAGCGACAGACCCAGa > 1:109625/1‑143 (MQ=21) gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGa > 1:634066/1‑143 (MQ=255) gTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAACGAGAAACAGAACCAGATTGa > 2:23670/1‑143 (MQ=255) atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCa > 1:80538/1‑143 (MQ=255) cTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGa < 1:743695/143‑1 (MQ=255) tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACCAAGAGAAACAGAACCAGATTGATGCATTGAg > 2:69161/1‑143 (MQ=255) atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGAGATTGCGGAACGACAAGGAGAAACAGAACCAGATTGATGCATTGAGCt > 1:378093/1‑143 (MQ=255) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACGAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCt > 2:767872/1‑143 (MQ=255) tATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaatt > 2:718789/1‑143 (MQ=255) aTGGCTCCAGATGACAAACATGATCACATATGAGGGA‑GGTGTTCGCACCTTACATCACGCTGTAGCCAACAGAACAGATATTGCGGAACGACAAAGAGACACAGAACCAGGTTGATGCAGTGAGCTTTCATCCTACGAaattc > 2:58673/1‑142 (MQ=37) ggCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaattaat < 1:369751/143‑1 (MQ=255) ccAGAAGACAATCGTGATCTCATATCAGCGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGAGATTGCGGAACGACAAAGAGAAACAGAACCAGCTTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCt < 2:332069/143‑1 (MQ=255) cAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCCGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTg < 1:645638/143‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGtt > 1:425709/1‑143 (MQ=255) tGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa > 1:534539/1‑143 (MQ=255) atgaaCACGAACTCATACCAAGAATCTTG‑TCGTACCTTACATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa < 2:711241/140‑1 (MQ=255) aCAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa < 1:668473/143‑1 (MQ=255) aaaCATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc > 1:755353/1‑143 (MQ=255) aaaCATGATCTCATATCAGGGA‑CTTGTTCGCACCCCCCCCCACCCCGTAGCCACCAGAACAGATACTGCCCCACGACAAAGAGAAACAGCACCACATCGATGCATCCAGCTTTCAGCCTACGAAATTAATTCCTCTTACAAGc > 2:486828/1‑143 (MQ=19) aaaCATGATCTCATATCAGGGA‑CTTGGTCGTGTTAGTCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTCAAAAGc > 2:316237/1‑143 (MQ=255) aaaCATGATCTCATATCAGGGA‑CTGGTACAGAACAAGGTAAAGGTTGTAGGCACCAGAACAGATATGGCGGAAGTGGAGAGATTGACGGGACCAGATGGATGGATTGAGCTTTCGTCCTGTGAAATTAATCGCTGGTAAAAGc > 2:357913/1‑143 (MQ=255) tcATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACa > 2:78291/1‑143 (MQ=255) tCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTAGGAAATTAATTGCTGGTAAAAGCATTGGGGACAGaaaa > 1:418648/1‑143 (MQ=255) cAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAAt > 2:755305/1‑143 (MQ=255) aGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATa > 2:832385/1‑143 (MQ=255) ttGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATa > 1:743726/1‑143 (MQ=255) ttCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACCGAACCAGATTGATGCATTGAGCTTTCATCCTATCAAATTAATTGCTGTTAAACGCATTGGGCACAGACGATACCCATAGCt > 2:608904/1‑143 (MQ=255) ttCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCt > 1:374765/1‑143 (MQ=255) tCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATAATGCGAAAAGACCAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAACCTAGGAAAATAATTGCTGTCAAAAGCATTGGGGACAGAAAATACCAAGAGCta > 2:351926/1‑142 (MQ=255) aCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATa > 2:694069/1‑143 (MQ=255) ccTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAGCCTATGAAATTAATGGCTGTTAAAAGCATTGGGTACAGAAAAGACCCATCGCTCCATaa > 1:781743/1‑142 (MQ=255) cATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGa < 1:536517/143‑1 (MQ=255) | AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGA‑CTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGA > NC_000913/2289972‑2290255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |