Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,553,103 IS5 (+) +4 bp coding (19‑22/2706 nt) malT → mal regulon transcriptional activator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288919 =NA (NA)49 (0.870) 38/284 0.5 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 3553103 = 0 (0.000)coding (19/2706 nt) malT mal regulon transcriptional activator
* ? NC_000913 = 2290113NA (NA)81 (1.450) 49/282 0.1 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 = 3553106 0 (0.000)coding (22/2706 nt) malT mal regulon transcriptional activator

GGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2289057‑2288919
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGTGGGC  >  NC_000913/3553103‑3553242
                                                                                                                                                                                                                                                                                       
ggtTAACGGCGTAAATGGGGAAGAAACGGTCTAAATAGGCTGATTTAAGGCATTTACGGGAGAAAATATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA                                                                                                                                          <  2:67259/140‑1
       GCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAAGATGAAGAAATGAAATGACTGAGTCAGCCGCGAAGAATTTCCCCGCTTATTCGCACCTTCCCTACGTCGTCC                                                                                                                                   >  1:853722/1‑143
         caacaacGGCTAAGACACGGTCTAAATAGGCTGATTCCAGGCAGTTACGGGAGAAAAAATCGGCTCAAACATGAACAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGG                                                                                                                                 <  2:597498/136‑1
         CTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTAGCGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCACACCTTCCCTAAGACGTCCGG                                                                                                                                 >  2:309187/1‑143
           cAAATGGCGAAGAAACGTTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGCTTTCCCTCGCTTTTTCGCACCTTCCCTAAGTCGTCCGGTT                                                                                                                               <  1:697819/142‑1
           TAAATGGCGAAGACACGGTCTCGATAGGCTGATTCAAGTCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTT                                                                                                                               <  2:232895/143‑1
           TAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTT                                                                                                                               <  1:885028/143‑1
            AAAGGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTC                                                                                                                              <  1:940804/143‑1
                 gcaAAGAAACGGGCTACATAGGCTGATTCAAGGCATTTACGGGGGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTC                                                                                                                         <  1:432874/140‑1
                 GCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGACATGTACTTATTTAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTC                                                                                                                         <  1:638334/143‑1
                   GAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGA                                                                                                                       >  1:543845/1‑143
                   GAAGAAACGGTATAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTACCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCCACGCGc                                                                                                                       >  2:134574/1‑142
                    AAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGAC                                                                                                                      >  1:190847/1‑143
                     AGAAACGGGCTAAAGAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACC                                                                                                                     <  1:408751/143‑1
                             gCTAAATAGGCTGATTCAAGGCATGTACGGGAGAAAAAGTCGGCTAAAACATGTAGTAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTG                                                                                                             <  2:352366/142‑1
                                 AATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTC                                                                                                         >  2:580539/1‑143
                                     GGCTGAGTCAAGGCAGTTACGGGAGAAAGTATCGTCGCGAGCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATGCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGA                                                                                                     <  2:759674/143‑1
                                     GGCAGATCCAAGGCAAGTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGA                                                                                                     <  1:344306/143‑1
                                        TGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCCGTCCGGTTCGACTCCCCCATCGCGTCGTTCTTGccgc                                                                                                  >  2:474212/1‑139
                                         ggcgCAAGGCATCTACGGGAGAAACAATCCGCTCAAACATGAAGAAATGAAAGGACTGAGTCAGCCGAGAAGAATTCCCCCGCTTATCCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGC                                                                                                 <  1:164874/139‑1
                                         GATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGC                                                                                                 <  1:887982/143‑1
                                              AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGGCCGTCACGTCGTCCGTGAGCGCCTGCT                                                                                            >  2:115366/1‑143
                                                     TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTACGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAA                                                                                     <  1:428349/143‑1
                                                           GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACATTCC                                                                               >  1:870554/1‑143
                                                             GAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGG                                                                             >  2:571055/1‑143
                                                               acatATCGACTCAAACAGGAATAAGTGATATGACTGAGTCAGCCGAGAAGAAGTTCCCCGCTTATTCGCACTTTCCCTATGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCG                                                                           <  2:605681/139‑1
                                                                 AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACCCGCCCATACCGCGGTTCGTGAGCGCCTGCTGGCCAAACCTTCCCGCGCG                                                                         >  2:321048/1‑143
                                                                       GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTATGTCGTGCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCCGGCTGCCCTTTCCGGCTCGAACAAC                                                                   >  1:141838/1‑143
                                                                           AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCC                                                               >  1:80130/1‑143
                                                                                TGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTG                                                          <  1:698532/143‑1
                                                                                 GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGG                                                         <  1:423047/143‑1
                                                                                  AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGCCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTACCGGCGCGAACAACTTGCGGCTGGg                                                        >  1:91130/1‑142
                                                                                   AGAAATGAAGTGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCG                                                       <  2:549196/143‑1
                                                                                     AAATGAAATGACTGAGTCAGCCGACAAGAATCTCCCCGCGTGTTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCT                                                     <  1:957385/143‑1
                                                                                       agGAAATGACTGAGTCAGCCGAGAAGAGTTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGA                                                   <  2:182668/141‑1
                                                                                        TGAAATGACTGCGTCAGCCGAGAAGAGTTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGAT                                                  <  1:752805/143‑1
                                                                                           AATGACTGAGGCAGCCGAGAAGAAGAGCCCCGCGGATGCGCGCCTGCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCAC                                               <  1:12248/143‑1
                                                                                             TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGA                                             <  1:288684/143‑1
                                                                                             TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTAACCGGGGCTAACAACTTCCGGCTGGCGCTGATCACGA                                             <  2:559072/143‑1
                                                                                             TGACTGAGTCAGCCGAGAAGAATTCCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGA                                             <  1:459952/143‑1
                                                                                                     TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGCCCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAAATTTCCGGCGCGAACAACTTCCGGCTGGCGCTGGTCACGAGAGCTGCG                                     >  1:133531/1‑143
                                                                                                              AAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGGTGGAGGGGCCACCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGA                            >  1:465944/1‑143
                                                                                                                     TCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCA                     <  1:571055/143‑1
                                                                                                                        CCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACACCTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACGACCC                  >  1:608787/1‑143
                                                                                                                              ATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTT            >  2:705479/1‑143
                                                                                                                                  GCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCA        <  2:543845/143‑1
                                                                                                                                  GCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGGCCTGCGGGCTACAGAGAGACCAAGCTCGTATCCCA        >  1:120157/1‑143
                                                                                                                                  GCACCTTCCCGAACTCGCCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCA        <  2:708413/143‑1
                                                                                                                                        gCCCGAAGTCGGCCGGGGCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGTGGGC  <  1:954188/142‑1
                                                                                                                                                                                                                                                                                       
GGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2289057‑2288919
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGTGGGC  >  NC_000913/3553103‑3553242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.