| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 368554 | 60 (1.060) | 4 (0.070) | 4/270 | 8.0 | 6.5% | intergenic (‑134/‑57) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase |
| ? | NC_000913 | = 368583 | 58 (1.080) | intergenic (‑163/‑28) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGCATATTAATTGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGAT > NC_000913/368415‑368696 | cTGCATATTAATTGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAg > 1:585096/1‑143 (MQ=255) aaTTGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTGGCGCTGt > 1:166014/1‑143 (MQ=255) tGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTGCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACt > 1:555889/1‑143 (MQ=255) aTTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTgc > 1:846193/1‑143 (MQ=255) tttCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGAGTGTAGCAGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCGGTACTGTgcg > 1:811724/1‑143 (MQ=255) ttCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTgcgc > 1:766199/1‑143 (MQ=255) ttCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTacgc > 2:512980/1‑143 (MQ=255) ataGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCaa < 2:945195/143‑1 (MQ=255) aacaacGTGGTGCACCTGGTGCAGATTCAGGACAACAAAT‑ATTGTAGCCGAAAACACCCTTCCTATACTCGGCTCACGTGGAAAGGTCATTGACGTGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACAttt > 2:407777/1‑143 (MQ=255) aacaacGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACAGGTTTTTACCAAAATAAGTTGCGCTTTCCTGTGCGCGCACCGCCtttt > 1:298354/1‑143 (MQ=255) gaatgtgCACCAGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACCTGATCCGTTGCGCTGTACTGTCCGCGCAACGACGTTTTGTcc > 1:448549/5‑143 (MQ=255) tggtgCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGa < 1:169014/143‑1 (MQ=255) gTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTa < 1:616750/143‑1 (MQ=255) tGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTAc < 1:213419/143‑1 (MQ=255) tGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTAc < 1:106253/143‑1 (MQ=255) gCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACt > 1:74229/1‑143 (MQ=255) c‑GGCCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAATTAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATgg < 2:453774/143‑1 (MQ=255) cATGTGTTGATGGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAAt < 1:839124/143‑1 (MQ=255) tttGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATacaac < 1:585481/143‑1 (MQ=255) ttGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATacaaca > 1:561313/1‑143 (MQ=255) tGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCCATACAacac > 1:928320/1‑143 (MQ=255) gATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACAcc < 2:585096/143‑1 (MQ=255) aTTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAAATACTGAAAAGGCAATACTACAccc > 2:54464/1‑143 (MQ=255) ttGTAGCCGCAACCCACCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCt < 2:724318/143‑1 (MQ=255) ttGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCt < 1:602475/143‑1 (MQ=255) ttGTAGCCGAAAACACCCGTCCTATACTTAGAGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATGTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCt < 2:944679/143‑1 (MQ=255) tGTAGCCGAAAACCCCCTTCCTATACTGGGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTg < 1:122640/143‑1 (MQ=255) aGCCGAAAACACCCTTCCCATACTGAGCGCAAAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACa < 2:520529/143‑1 (MQ=255) ccGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACCTc > 1:705169/1‑143 (MQ=255) cGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATcc > 2:148208/1‑143 (MQ=255) gacacCCTTCCTCTACCGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCCACACGTGCGGTCAAGTAATGGCAATACAACACCCTGACATCCAGcc < 1:239659/142‑1 (MQ=255) ccTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCctgctg < 1:719017/143‑1 (MQ=255) cTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGt < 2:341068/143‑1 (MQ=255) cTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCCGCTGt > 1:626797/1‑143 (MQ=255) tCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTa < 2:413793/143‑1 (MQ=255) ccTATACTGAGCGCACAATAAAAAATCATATACACATCACTTACATGAGAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGCACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCCGCTaa > 2:992818/1‑143 (MQ=255) tataCTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTGGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGACAATACAACAACCTGACATCCAGCCTGCTGTTAAcc > 2:573851/1‑143 (MQ=255) aCTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCTCGCAACGACATTTTGTCCGAGGCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATa < 2:180517/143‑1 (MQ=255) aCTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATa < 1:574414/143‑1 (MQ=255) tGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGc > 2:768681/1‑143 (MQ=255) cgcACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGAGTTc > 1:896898/1‑143 (MQ=255) caATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACACTTTGTCCGAGTCGTGCGGTACTGCCATGGCACTACACCACCCTGACATCCAGCCTGCTGTTAACCATAGCGGTGAGGt > 1:208317/1‑143 (MQ=255) aaTAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCTGAGTCGTGAGGTACTGAAATGGCAATACAACACCCGGACATCCAGCGTGCTGTTAACCATAGCGTTCAGGTg > 2:541606/1‑143 (MQ=255) aaTAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCCTCGCGTTCCGGTg > 1:189775/1‑143 (MQ=255) aaTAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTg > 1:823457/1‑143 (MQ=255) aTAAAAAATCATTTACAGGTGTTGAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGCgg < 2:413374/143‑1 (MQ=255) aaaaaaTCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCg > 1:901082/1‑143 (MQ=255) aaaaTCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTAGTCGGAGTCGTGAGGTACTGAAATGGCAATACAACACCGTGACATCCAGCCTGCTGTTAACCAAAGCGATCGGGGGGCGag > 2:293987/1‑142 (MQ=255) cATTTACACGTCTCTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACTACACTTTCTCCGCGCCTTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTg < 1:376116/143‑1 (MQ=255) aTTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACGACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTgg < 1:148208/143‑1 (MQ=255) tttACTTGTCTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACCTTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGt < 1:847338/143‑1 (MQ=255) tttACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCGGGTGGCGCTCggcggt > 1:780946/1‑138 (MQ=255) tACATGTTTTTAACAAAATACTTTGCGCTGTACTGTTCGCGCAACGACATTTTCTCCGAGTCTTGACGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGc < 2:53275/143‑1 (MQ=255) aTGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCgg > 1:69139/1‑143 (MQ=255) cAAAATGAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACCTCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg < 2:226712/143‑1 (MQ=255) cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg < 2:148874/143‑1 (MQ=255) cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg < 1:324226/143‑1 (MQ=255) cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTggg < 1:283138/143‑1 (MQ=255) cAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACAATTTGTCCGAGTCGTGAGGTACTGAAATGGCAAGACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGGTgcg > 1:837016/1‑141 (MQ=255) tAAGTTGCGCTGTACTGTGCGCGCAACGACAATTCGTGCGAGGCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCtgat < 1:512980/143‑1 (MQ=255) | CTGCATATTAATTGACATTTCTATAGTTAAAACAACGTGGTGCACCTGGTGCACATTC‑GGGCATGTTTTGATTGTAGCCGAAAACACCCTTCCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGAT > NC_000913/368415‑368696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |